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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTGTATTACGCTGGGAGTCATGGCATGGATATCATGGGCCCTGCTAAAAGCTCGGATGGTTTCCGAGTTAAGGGTACCAAGTCTAGGGATAAAAGGgtatctattcttgataacccagcaactatttgaaatagcccaattcgataaaatagtatggatttctgtacaatcgatgttcaaccgtgtttgccttcttggctaatcttatttacttcaccttgcag

Basic information

species Physcomitrella patens
transcript PP1S227_48V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S227_48V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os10g40550.1 (Oryza sativa), 5'ss of exon 6
AGAACTGTATTACGCTGGGAGTCATGGCATGGATATCATGGGCCCTGCTAAAAGCTCGGATGGTTTCCGAGTTAAGGGTACCAAGTCTAGGGATAAAAGGgtatctattcttgataacccagcaactatttgaaatagcccaattcgataaaatagtatggatttctgtacaatcgatgttcaaccgtgtttgccttcttggctaatcttatttacttcaccttgcag
      |||||||||||| |||||||| |||||||||||||| |||| ||  |  || |||      |||||   ||  | || ||  |  | ||  |||    ||  |   ||     || || || | |  | |       ||| | | |  | | |    |    |   |   |  |  ||     | |  ||| |||||| ||                     
------GTATTACGCTGGAAGTCATGGAATGGATATCATGGGGCCTGTTAGGAAGTCTGAT-----TCGAGT---GGTCAGCATGTGGAATG-TATCAGGTCCACTGATTCAGA-Ggtgcaacagctttgttgatttt-----ttccacagacaaattt---ctctcttgtgacaaaattctaattagttattgctttttggctcatag-------------------

upper sequence: PP1S227_48V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv16s0022g00660.t01 (Vitis vinifera), 5'ss of exon 4
AGAACTGTATTACGCTGGGAGTCATGGCATGGATATCATGGGCCCTGCTAAAAGCTCGG---ATGGTTTCCGAGTTAAGGGTACCAAGTCTAGGGATAAAAGGgtatctattcttgataacccagcaactatttgaaatagcccaattcgata-aaatagtatggatttc-tgtacaatcgatgttcaaccgtgtttgccttcttggc---taatcttatttacttcaccttgcag
    || || |||||||| |||||||| ||||| |||||||||||||  | |  |||      |  |  ||     ||  |||  | ||  |  || ||   |||| |         || || || |||| |||   ||     |  |  ||| | ||| |||   |||| | |   || | | || |   |  ||| | |  |   |   | || |||||| |||     || ||
---GCTCTACTACGCTGGTAGTCATGGGATGGACATCATGGGCCCTGTCAGACACTCCATTTCTAATGACCATCCAAATTGTATTAGGTTAACTGACAAGCAGgtaccc--------tagcctagaaactctttctcatgaaatatatatatatatatactatctctttcatatgttat-gttatttatttggttttacttattcacccttttatattattttcttatgaatgtag