1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGATACAGGGGAAAGGGAGCTATGAAAGTCGAGCGGAAATGCTTCACTTGATCGTCGAGCTGGTTGAAGCAAGCAGCGTTACTGACAACCCTGAGTGGAGgtgaggcagcggtttgggtgttcagggttctttccgtgctagttttatatctgaaactgacatttttcaatattctgtgattgaatttaacgtaatattgctacaattggatgactttgtgaaactaaccttgggcgggagaacag
species | Physcomitrella patens |
transcript | PP1S216_69V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCGTTACTGACAACCCTGAGTGGAG TG-TGATGATCAAGTGGCTAAGGACATCCTCCTTGTCGATGCTATCGCCGAEST: gi|208364455|gb|DC958024.1|DC958024
genomic: AGCAGCGTTACTGACAACCCTGAGTGGAGgtgaggcagc ... gggagaacagTGTTGATGATCAAGTGGCTAAGGACATCCTCCTTGTCGATGCTATCGCCGA
EST: ATCGTCGAGCTGGTTGAAGCAAGCAGCGTTACTGACAACCCTGAGTGGAG TGTTGATGATCAAGTGGCTAAGGACATCCTCCTTGTCGATGCTATCGCCGAEST: gi|162265701|gb|FC443107.1|FC443107
genomic: ATCGTCGAGCTGGTTGAAGCAAGCAGCGTTACTGACAACCCTGAGTGGAGgtgaggcagc ... gggagaacagTGTTGATGATCAAGTGGCTAAGGACATCCTCCTTGTCGATGCTATCGCCGA
EST: AGCAAGCAGCGTTACTGACAACCCTGAGTGGAG TGTTGATGATCAAGTGGCTAAGGACATCCTCCTTGTCGATGCTATCGCCGA
genomic: AGCAAGCAGCGTTACTGACAACCCTGAGTGGAGgtgaggcagc ... gggagaacagTGTTGATGATCAAGTGGCTAAGGACATCCTCCTTGTCGATGCTATCGCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATACAGGGGAAAGGGAGCTATGAAAGTCGAGCGGAAATGCTTCACTTGATCGTCGAGCTGGTTGAAGCAAGCAGCGTTACTGACAACCCTGAGTGGAGgtgaggcagcggtttgggtgttcagggttctttccgtgctagttttatatctgaaactgacatttttcaatattctgtgattgaatttaacgtaatattgctacaattggatgactttgtgaaactaaccttgggcgggagaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG