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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATTATCCAGATCATCTTCAGGGAGAGGCTCCAGGTGACTACGGGTTTGATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAAgtatgttatgtatttccatatcaatcatctcgtgttgtgttccttcagctttatttgggatgtgctagcaattctgaaagaatctattcatgttgcttaa...

Basic information

species Physcomitrella patens
transcript PP1S215_109V6.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208373918|gb|DC944651.1|DC944651
EST:     GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAA                         CTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGT
genomic: GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAAgtatgttatg ... tcgtgatcagCTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGT
EST: gi|162262567|gb|FC439753.1|FC439753
EST:     GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAA                         CTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGT
genomic: GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAAgtatgttatg ... tcgtgatcagCTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGT
EST: gi|162276352|gb|FC452433.1|FC452433
EST:     GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAA                         CTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGT
genomic: GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAAgtatgttatg ... tcgtgatcagCTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGT