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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATTGTCAGTGAGCGGCTACATATGGGAGATCGTCTTCGACATCCTCATCATCGTTGTAGGCTTACTGATGTTTGCCTTCCTCATTGGTAATATGCAAgtaagtttagcttttcaaccattccgtgccactctgtcgagcctgtaacagcttgagactgtctgaatctgaatgactgattatttggggctgtgcttttggttag

Basic information

species Physcomitrella patens
transcript PP1S211_70V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S211_70V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv06s0004g02670.t01 (Vitis vinifera), 5'ss of exon 6
GACATTGTCAGTGAGCGGCTACATATGGGAGATCGTCTTCGACATCCTCATCATCGTTGTAGGCTTACTGATGTTTGCCTTCCTCATTGGTAATATGCAAgtaagtttagcttttcaaccattccgtgccactctgtcgagcctgtaacagcttgagactgtctgaatctga-atgactgattatttggggctgtgcttttggttag
 |   | ||    |||  |||  |  | || ||  | || | |||| | ||      | | || ||  |  | ||||| || |||||||||||||||||||||||||     |   || |    | |     |     |    |||   || || |     |  | ||| || | |||||    |||    |  | || || |    
AAATCTTTCCACAAGCACCTATGTTGGAGAAATTATTTTTGCCATCATAATTGCTACTCTTGGATTGGTTCTCTTTGCGTTGCTCATTGGTAATATGCAAgtaagttcgaaatacaaatctcaacttatactttctgtgttattgttggagttttaagaatttaggatcagagaagactggcgtttt----cccttctcttaga---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162266494|gb|FC442530.1|FC442530
EST:     TCATCGTTGTAGGCTTACTGATGTTTGCCTTCCTCATTGGTAATATGCAA                         ACATACCTGCAATCTCTGACCAAGCGGTTAGAGGAAATGAGAGTGAAGCGG
genomic: TCATCGTTGTAGGCTTACTGATGTTTGCCTTCCTCATTGGTAATATGCAAgtaagtttag ... ttttggttagACATACCTGCAATCTCTGACCAAGCGGTTAGAGGAAATGAGAGTGAAGCGG