1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAGgtgtgattctaatcaagttgacgttcactgcattgaaactgttttcggttaggagggtattgattgtttgccctgagttgctgagacccagatttattttcttacacttttttgctgatgtatacag
species | Physcomitrella patens |
transcript | PP1S201_84V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAG GAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTTEST: gi|208372750|gb|DC952637.1|DC952637
genomic: ACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAGgtgtgattct ... atgtatacagGAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTT
EST: ACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAG GAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTTEST: gi|208366150|gb|DC955251.1|DC955251
genomic: ACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAGgtgtgattct ... atgtatacagGAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTT
EST: GATGAGATCTCTNGTGTACGACA- GAGCGTGACCCCATCGAAAGGANTAGGAAACTGTTGCTATCTCATGAG-TTEST: gi|208365046|gb|DC947310.1|DC947310
genomic: GATGAGATCTCTGGTGTACGACAGgtgtgattct ... atgtatacagGAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTT
EST: ACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAG GAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTTEST: gi|208368383|gb|DC955552.1|DC955552
genomic: ACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAGgtgtgattct ... atgtatacagGAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTT
EST: GCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAN GAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTTEST: gi|67726533|gb|BJ976792.1|BJ976792
genomic: GCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAGgtgtgattct ... atgtatacagGAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTT
EST: ACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAG GAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTTEST: gi|37840758|gb|BJ598766.1|BJ598766
genomic: ACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAGgtgtgattct ... atgtatacagGAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTT
EST: ACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAG GAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTT
genomic: ACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAGgtgtgattct ... atgtatacagGAGCGTGACCCCATCGAAAGGATTAGGAAACTGTTGCTATCTCATGAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAGgtgtgattctaatcaagttgacgttcactgcattgaaactgttttcggttaggagggtattgattgtttgccctgagttgctgagacccagatttattttcttacacttttttgctgatgtatacag
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