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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTGAAGCACGAGGATGCTGAGAACATCGGATATGTTATACCCACCCCTGTTATTACTCACTTTATTACTGATTACGTCCGCAGCGGTGACTATACAGgtacgagtatccactttggcgtttacgcgtggtgtgacataaattggaatgtagtttttgtgagtgcagggccattgtgttcttttgtttcaactcacca...

Basic information

species Physcomitrella patens
transcript PP1S1_203V6.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S1_203V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G165969_T01 (Zea mays), 5'ss of exon 4
TCCCTGAAGCACGAGGATGCTGAGAACATCGGATATGTTATACCCACCCCTGTTATTACTCACTTTATTACTGATTACGTCCGCAGCGGTGACTATACAGgtacgagtatccactttggcgtttacgcgtggtgtgacataaattggaatgtagtttttgtgagtgcagggccattgtgttcttttgtt--tcaactcacca----
|| || || || || ||||| |||||||| || ||||||||||||||||| |||||||  ||||| |||   ||||||         || || || ||||||||     |||  ||     ||| |    | | |    |    | ||     ||| ||  |    |  ||| |    || |    |     |  || | |     
TCTCTTAAACATGAAGATGCAGAGAACATAGGCTATGTTATACCCACCCCAGTTATTAACCACTTCATTGAAGATTACAAAAAATCTGGAGAATACACAGgtac---cttcctgttctatttttgcatacgatttattgt---cttgagcagtgttcttaaggcgcctaggcgagcaagtgcaccagacaaccgccttagcgccta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162163954|gb|FC339864.1|FC339864
EST:     TGTTATTACTCACTTTATTACTGATTACGTCCGCAGCGGTGACTATACAG                         GATTCCCCATTTTAGGTATTGAATGGCAAAAGATGGAAAATCCTGATCTCC
genomic: TGTTATTACTCACTTTATTACTGATTACGTCCGCAGCGGTGACTATACAGgtacgagtat ... aactatgcagGATTCCCCATTTTAGGTATTGAATGGCAAAAGATGGAAAATCCTGATCTCC
EST: gi|162256228|gb|FC432284.1|FC432284
EST:     TGTTATTACTCACTTTATTACTGATTACGTCCGCAGCGGTGACTATACAG                         GATTCCCCATTTTAGGTATTGAATGGCAAAAGATGGAAAATCCTGATCTCC
genomic: TGTTATTACTCACTTTATTACTGATTACGTCCGCAGCGGTGACTATACAGgtacgagtat ... aactatgcagGATTCCCCATTTTAGGTATTGAATGGCAAAAGATGGAAAATCCTGATCTCC