Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGGAGAAGTGCGTGCTGGCGTCGTCTGGATTTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatccagatactcgcgtgttggtgcattagtcgcttgtagagtaattagcagacattaagaaactgaagcattttccttcatgtatgtag

Basic information

species Physcomitrella patens
transcript PP1S197_22V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208359340|gb|DC939107.1|DC939107
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208364450|gb|DC954525.1|DC954525
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|18341261|gb|BJ173295.1|BJ173295
EST:     CGCCCGGCATCAG                         ATTTATCAGCACCAGCATACCAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: CGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100443206|gb|BY981832.1|BY981832
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208393290|gb|DC942444.1|DC942444
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100367799|gb|BY984789.1|BY984789
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208392219|gb|DC929480.1|DC929480
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208377412|gb|DC927072.1|DC927072
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|162168953|gb|FC345635.1|FC345635
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208358314|gb|DC934535.1|DC934535
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208366765|gb|DC940079.1|DC940079
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208368331|gb|DC955528.1|DC955528
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100384610|gb|BY950600.1|BY950600
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|67717117|gb|BJ967376.1|BJ967376
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|162168952|gb|FC345634.1|FC345634
EST:     CAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: CAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208379303|gb|DC927286.1|DC927286
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208368886|gb|DC947444.1|DC947444
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208371088|gb|DC955936.1|DC955936
EST:     TCAGGCGGACGTCCGATCTCTTCAGAAGAACCCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TCAGGCGGACGTCCGATCTCTTCAGAAGAA-CCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100442468|gb|BY963162.1|BY963162
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|162186319|gb|FC361627.1|FC361627
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|37833061|gb|BJ591073.1|BJ591073
EST:     CAGGCGGACGTCCGATCTTCTTCAGAAGAACCTGGACGCCCGGCATCCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACA
genomic: CAGGCGGACGTCCGATC-TCTTCAGAAGAACCTGGACGCCCGGCAT-CAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACA
EST: gi|208358782|gb|DC942948.1|DC942948
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|67725639|gb|BJ975898.1|BJ975898
EST:     TTCAGAAGAACCTGGACGCCCGGCATCAG                         A-TTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100446728|gb|CJ971027.1|CJ971027
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208365808|gb|DC955439.1|DC955439
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|37840277|gb|BJ598285.1|BJ598285
EST:     CTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: CTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208373759|gb|DC952722.1|DC952722
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208367768|gb|DC944014.1|DC944014
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208374709|gb|DC948667.1|DC948667
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100434760|gb|BY960826.1|BY960826
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|162209736|gb|FC385670.1|FC385670
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208371358|gb|DC952119.1|DC952119
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208346662|gb|DC913308.1|DC913308
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208388708|gb|DC941521.1|DC941521
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|162186318|gb|FC361626.1|FC361626
EST:     GGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: GGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACGGAGAAGTGCGTGCTGGCGTCGTCTGGATTTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatccagatactcgcgtgttggtgcattagtcgcttgtagagtaattagcagacattaagaaactgaagcattttccttcatgtatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC