Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggtttagttgactgcaattcccaggcagaatgtgattgacatgctggttctttgtctgttgttgtaaggagtttcagaatgattatgcgtaag...

Basic information

species Physcomitrella patens
transcript PP1S194_4V6.4
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37838926|gb|BJ596934.1|BJ596934
EST:     TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTG                         AGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
EST: gi|18339098|gb|BJ171124.1|BJ171124
EST:     GTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTG                         AGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: GTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
EST: gi|162197958|gb|FC373674.1|FC373674
EST:     TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTG                         AGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
EST: gi|37840557|gb|BJ598565.1|BJ598565
EST:     TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTG                         AGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
EST: gi|162213128|gb|FC389552.1|FC389552
EST:     TTCTGAGGGTTGCGAAGGGAGCTCTCGACATNGCCGTTGCTATTCGCTT-                         -GACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
EST: gi|162167608|gb|FC344260.1|FC344260
EST:     TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTG                         AGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
EST: gi|162171360|gb|FC347259.1|FC347259
EST:     TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTG                         AGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
EST: gi|162197957|gb|FC373673.1|FC373673
EST:     TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTG                         AGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
EST: gi|37838675|gb|BJ596683.1|BJ596683
EST:     TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTG                         AGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
EST: gi|18333393|gb|BJ165407.1|BJ165407
EST:     TCTCGACATTGCCGTTGCTATTCGCTTG                         AGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: TCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
EST: gi|67692780|gb|BJ953013.1|BJ953013
EST:     TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTG                         AGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
EST: gi|67695299|gb|BJ955532.1|BJ955532
EST:     TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTG                         AGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC
genomic: TTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggt ... cgtattccagAGACTTTGTGGTTGGAGTTCAATCAGTACGCAGTCGGTTCACGATGGAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGGTGGTACGGTGTAGTGGGACATTCTGAGGGTTGCGAAGGGAGCTCTCGACATTGCCGTTGCTATTCGCTTGgtatgtcggtttagttgactgcaattcccaggcagaatgtgattgacatgctggttctttgtctgttgttgtaaggagtttcagaatgattatgcgtaag

- - - - - - - - - - - - - - - - - - - - - GGAGCT