1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCACTTTAGCTGCGCGACGAAGAGCTGCCGCGGTTATCCACGGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAAgtaagtttttggggcaggaatcctgatatttgttctgcatgtagcagccatcttcttgcacctattgttttgcttagcaacgtgttaatgctttcatatg...
species | Physcomitrella patens |
transcript | PP1S194_11V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAA AGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGGEST: gi|162265897|gb|FC442900.1|FC442900
genomic: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAAgtaagttttt ... tctcttttagAGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGG
EST: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAA AGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGGEST: gi|67699724|gb|BJ959957.1|BJ959957
genomic: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAAgtaagttttt ... tctcttttagAGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGG
EST: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAA AGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGGEST: gi|37838331|gb|BJ596339.1|BJ596339
genomic: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAAgtaagttttt ... tctcttttagAGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGG
EST: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAA AGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGGEST: gi|67576224|gb|BJ949048.1|BJ949048
genomic: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAAgtaagttttt ... tctcttttagAGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGG
EST: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAA AGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCEST: gi|162265898|gb|FC442901.1|FC442901
genomic: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAAgtaagttttt ... tctcttttagAGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGC
EST: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAA AGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGGEST: gi|18360614|gb|BJ192677.1|BJ192677
genomic: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAAgtaagttttt ... tctcttttagAGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGG
EST: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAA AGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGGEST: gi|37851175|gb|BJ609183.1|BJ609183
genomic: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAAgtaagttttt ... tctcttttagAGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGG
EST: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAA AGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGG
genomic: GGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAAgtaagttttt ... tctcttttagAGATAGAGCAGGCGGGTACACTCGAGTGCTGGCTACGCGGTCTAGGCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCACTTTAGCTGCGCGACGAAGAGCTGCCGCGGTTATCCACGGAGATGAAAACCTGCACAAGGTCTTTTCAGAACTAGCTTTTCGTTACAAgtaagtttttggggcaggaatcctgatatttgttctgcatgtagcagccatcttcttgcacctattgttttgcttagcaacgtgttaatgctttcatatg
- - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - GAGATG