Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTGAAACCAGATAGGATAGATCCTGCAAAGGATCCTGAAGATGTGATTAAGCAATTTCTTAATAAGgtacgtaacatggtcagaattaggtagaaattcatctgcaattatgtcgagtacctcaaagtcgatctggttgtcctcgagatttttaaagaattagaaa...

Basic information

species Physcomitrella patens
transcript PP1S192_39V6.4
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100373143|gb|BY949230.1|BY949230
EST:     AGATCCTGCAAAGGATCCTGAAGATGTGATTTAAGCA-TTTCTTAATANG                         ATCACGTATATACATGGGGCATACGATGCTGATGNAAGTTTTATCCA-TTG
genomic: AGATCCTGCAAAGGATCCTGAAGATGTGATT-AAGCAATTTCTTAATAAGgtacgtaaca ... aattttgcagATCACGTATATACATGGGGCATACGATGCTGATGAAAGTTTTATCCAATTG
EST: gi|100448078|gb|CJ972377.1|CJ972377
EST:     TAGATCCTGCAAAGGATCCTGAAGATGTGATTAAGCAATTTCTTAATAAG                         ATCACGTATATACATGGGGCATACGATGCTGATGAAAGTTTTATCCAATTG
genomic: TAGATCCTGCAAAGGATCCTGAAGATGTGATTAAGCAATTTCTTAATAAGgtacgtaaca ... aattttgcagATCACGTATATACATGGGGCATACGATGCTGATGAAAGTTTTATCCAATTG
EST: gi|208346321|gb|DC905268.1|DC905268
EST:     TAGATCCTGCAAAGGATCCTGAAGATGTGATTAAGCAATTTCTTAATAAG                         ATCACGTATATACATGGGGCATACGATGCTGATGAAAGTTTTATCCAATTG
genomic: TAGATCCTGCAAAGGATCCTGAAGATGTGATTAAGCAATTTCTTAATAAGgtacgtaaca ... aattttgcagATCACGTATATACATGGGGCATACGATGCTGATGAAAGTTTTATCCAATTG
EST: gi|18373140|gb|BJ204742.1|BJ204742
EST:     TAGATCCTGCAAAGGATCCTGAAGATGTGATTAAGCAATTTCTTAATAAG                         ATCACGTATATACATGGGGCATACGATGCTGATGAAAGTT
genomic: TAGATCCTGCAAAGGATCCTGAAGATGTGATTAAGCAATTTCTTAATAAGgtacgtaaca ... aattttgcagATCACGTATATACATGGGGCATACGATGCTGATGAAAGTT
EST: gi|162279046|gb|FC455073.1|FC455073
EST:     TAGATCCTGCAAAGGATCCTGAAGATGTGATTAAGCAATTTCTTAATAAG                         ATCACGTATATACATGGGGCATACGATGCTGATGAAAGTTTTATCCAATTG
genomic: TAGATCCTGCAAAGGATCCTGAAGATGTGATTAAGCAATTTCTTAATAAGgtacgtaaca ... aattttgcagATCACGTATATACATGGGGCATACGATGCTGATGAAAGTTTTATCCAATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACTTGAAACCAGATAGGATAGATCCTGCAAAGGATCCTGAAGATGTGATTAAGCAATTTCTTAATAAGgtacgtaacatggtcagaattaggtagaaattcatctgcaattatgtcgagtacctcaaagtcgatctggttgtcctcgagatttttaaagaattagaaa

- - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA