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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAAAACAAAGGTGAAGGATGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTGgtacgcttccaattatgaggacttcagtggagtgcttcatttatctaacgctaaattgagtttaagcttttctgtttgaatttagagattaattttagtt...

Basic information

species Physcomitrella patens
transcript PP1S189_99V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162169624|gb|FC345564.1|FC345564
EST:     TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTG                         ATGCTGCGGTCTTGATGTTGAAGAACAAGATTCACCGCATTCCTATTGTAA
genomic: TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTGgtacgcttcc ... ggtattgcagATGCTGCGGTCTTGATGTTGAAGAACAAGATTCACCGCATTCCTATTGTAA
EST: gi|162228632|gb|FC405452.1|FC405452
EST:     TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTG                         ATGCTGCGGTCTTGATGTTGAAGAACAAGATTCACCGCATTCCTATTGTAA
genomic: TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTGgtacgcttcc ... ggtattgcagATGCTGCGGTCTTGATGTTGAAGAACAAGATTCACCGCATTCCTATTGTAA
EST: gi|208391806|gb|DC942340.1|DC942340
EST:     TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTG                         ATGCTGCGGTCTNGATGTTGAA
genomic: TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTGgtacgcttcc ... ggtattgcagATGCTGCGGTCTTGATGTTGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGAAAACAAAGGTGAAGGATGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTGgtacgcttccaattatgaggacttcagtggagtgcttcatttatctaacgctaaattgagtttaagcttttctgtttgaatttagagattaattttagtt

- - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG