1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAAAAGAAAGGGCAGGAATCGAAGATACCTGCTGACATGCCAAAACCTAAGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtccacatgactttgaatgtgtaactagttattgtcaaagtggataggttcaaattcaactcctgacctgtctttattgcgctagatgttttcgc...
species | Physcomitrella patens |
transcript | PP1S186_65V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCGEST: gi|162275893|gb|FC451454.1|FC451454
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
EST: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCGEST: gi|162197911|gb|FC373653.1|FC373653
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
EST: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCGEST: gi|100385385|gb|BY950977.1|BY950977
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
EST: GTACGGGAATGCCGAAG GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCGEST: gi|162246878|gb|FC422767.1|FC422767
genomic: GTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
EST: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCGEST: gi|18367296|gb|BJ199378.1|BJ199378
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
EST: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCCGGAGTCTCEST: gi|162165356|gb|FC341975.1|FC341975
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCC-GGAGTCTC
EST: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAAGAAAGGGCAGGAATCGAAGATACCTGCTGACATGCCAAAACCTAAGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtccacatgactttgaatgtgtaactagttattgtcaaagtggataggttcaaattcaactcctgacctgtctttattgcgctagatgttttcgc
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG