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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCTGGGTATCCGTAGAGGAATCGACTTGGCCACCACGCTTGAGCGAATCGACAAAAACTTTGTCATTACCGATCCTCGGCTCCCTGACAATCCAATTgtaagcttcttgtactttcaaccgttcaatggtcccctgatgttgctgtaccatgcttgatgtggatgtacttgcaggtactttcactgatggtgagactgaaattgcgtggcccctgtgatgcag

Basic information

species Physcomitrella patens
transcript PP1S179_27V6.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S179_27V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os04g23890.3 (Oryza sativa), 5'ss of exon 5
TACTCTGGGTATCCGTAGAGGAATCGACTTGGCCACCACGCTTGAGCGAATCGACAAAAACTTTGTCATTACCGATCCTCGGCTCCCTGACAATCCAATTgtaagcttcttgtactttcaaccgttcaatggtcccctgatgttgctgtaccatgcttgatgtggatgtacttgcaggtactttcactgatggtgagactgaaattgcgtggcccctgtgatgcag
      ||  |||||    || |||||| ||||||||||||| ||||| ||||| || ||||| ||||| ||||| ||  || |||| ||||| || || ||||||  |    ||||    |||  |   |||| | |  | | || |     |    |  |||  ||    ||| |||  |   |||||  |   |  ||   | | | ||    ||||  |   
GGAGAAGGACATCCGGCAGGGGATCGACCTGGCCACCACGCTGGAGCGCATCGAGAAGAACTTCGTCATCACCGACCCCAGGATCCCGGACAACCCCATCgtaagcagcc---acttc--gccgc-cgccggtctcttcttctcgccg----gtcgccggcgtgtttgcgtgtgctggtggtg--actgacagaatgggtgtggt-gtgggggggttgtgcag---

upper sequence: PP1S179_27V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA15G04850.1 (Glycine max), 5'ss of exon 5
TACTCTGGGTATC-CGTAGAGGAATCGACTTGGCCACCACGCTTGAGCGAATCGACAAAAACTTTGTCATTACCGATCCTCGGCTCCCTGACAATCCAATTgtaag-cttcttgtactttcaaccgttcaatggtcccctgatgttgctgta-ccatgcttgatgtgga-----tgtacttgcag-gtactttcactgatggtgagactgaaattgcgtggcccctgtgatgcag
  |   ||| |   || | |||  | ||  | || ||||||||||| || ||||| ||||||||||||||||| |||||  |||| || |||||||| || ||||| ||   || |   |        || |  |       |||| || ||    || |   ||| |      |||||| |  | | || |  |    ||   ||  || | |||| |    | | |   |   
-GCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATCGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAgtaagactctctgaatcatttgtaccgcagtactgaaaaagtgtttctctaattctgttctgtgttggattcttgtactggaggtgaacatgtaacactgtaaagtttgtacttgctttttactttttcag---

upper sequence: PP1S179_27V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ32904 (Selaginella moellendorffii), 5'ss of exon 6
TACTCTGGGTATCCGTAGAGGAATCGACTTGGCCACCACGCTTGAGCGAATCGACAAAAACTTTGTCATTACCGATCCTCGGCTCCCTGACAATCCAATTgtaagcttcttg--tactttcaaccgttcaatggtcccctgatgttgctgtaccatgcttgatgtggatgtacttgcaggtactttcactgatggtgagactgaaattgcgtggcccctgtgatgcag
 |    ||  || || ||||| |||||| |||| |||||  | ||||| ||||| || ||||||||||| || ||||| || ||||| ||||||||||| ||||| |    |  |  |||   ||| |  |   | |  |  | || |     ||                                                                         
AAAGAAGGAAATTCGAAGAGGCATCGACCTGGCAACCACATTGGAGCGTATCGAAAAGAACTTTGTCATCACTGATCCCCGTCTCCCCGACAATCCAATCgtaaggtctcagcctgttttgcgccgattca-aatgcaatattattacaaccgcag------------------------------------------------------------------------

upper sequence: PP1S179_27V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ15768 (Selaginella moellendorffii), 5'ss of exon 5
TACTCTGGGTATCCGTAGAGGAATCGACTTGGCCACCACGCTTGAGCGAATCGACAAAAACTTTGTCATTACCGATCCTCGGCTCCCTGACAATCCAATTgtaagcttcttg--tactttcaaccgttcaatggtcccctgatgttgctgtaccatgcttgatgtggatgtacttgcaggtactttcactgatggtgagactgaaattgcgtggcccctgtgatgcag
 |    ||  || || ||||| |||||| |||| |||||  | ||||| ||||| || ||||||||||| || ||||| || ||||| ||||||||||| ||||| |    |  |  |||   ||| |  ||  | |  |  | || |     ||                                                                         
AAAGAAGGAAATTCGAAGAGGCATCGACCTGGCAACCACATTGGAGCGTATCGAAAAGAACTTTGTCATCACTGATCCCCGTCTCCCCGACAATCCAATCgtaagatctcagcctgttttgcgccgattcata-tgcaatattattacaaccgcag------------------------------------------------------------------------