1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCAGAAGGTGGTGCAGGATAAGAAAGTGTTGGAGGTTCATGTAGAGAAGGGCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttactctccgtgcgttcaaggcgtgctcttctgacaacaaatttcgtagaagtttttgtgaacaggataacgcttggatgtgtatatggattgtctgatacgaaaagttaatgttattctggaaacatgctgacggttagattgcattttgtgtgatcgatgtgtttgttgcag
species | Physcomitrella patens |
transcript | PP1S174_37V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCG CCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGEST: gi|100431293|gb|BY960124.1|BY960124
genomic: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttact ... tttgttgcagCCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAG
EST: ATGGCGCATGGGCAGAAGATTTACTTTTCCA-GGCGAGGCTGATGAGGCG CCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCACEST: gi|162151466|gb|FC326971.1|FC326971
genomic: ATGGCGCATGGGCAGAAGATT-ACTTT-CCAAGGCGAGGCTGATGAGGCGgtgcgttact ... tttgttgcagCCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCAC
EST: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCG CCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGEST: gi|162173994|gb|FC350509.1|FC350509
genomic: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttact ... tttgttgcagCCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTG
EST: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCG CCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCACEST: gi|162161591|gb|FC338798.1|FC338798
genomic: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttact ... tttgttgcagCCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCAC
EST: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCG CCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCACEST: gi|162263312|gb|FC439094.1|FC439094
genomic: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttact ... tttgttgcagCCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCAC
EST: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCG CCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGEST: gi|100441389|gb|BY962678.1|BY962678
genomic: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttact ... tttgttgcagCCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTG
EST: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCG CCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCACEST: gi|162166513|gb|FC343210.1|FC343210
genomic: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttact ... tttgttgcagCCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCAC
EST: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCG CCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCACEST: gi|161979173|gb|EE296304.1|EE296304
genomic: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttact ... tttgttgcagCCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCAC
EST: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCG CCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCACEST: gi|100384322|gb|BY969453.1|BY969453
genomic: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttact ... tttgttgcagCCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCAC
EST: GCATGGCGCATGGGCAGAAGATTACTTTCCA-GGCGAAGCTGATGAGGCG CCCGA-ACAGTGCACAGG-GACCTTGTATTCGGTTTGEST: gi|162234220|gb|FC409758.1|FC409758
genomic: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttact ... tttgttgcagCCCGACACAGTG-ACAGGAGACATTGTATTCGTTTTG
EST: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCG CCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCAC
genomic: GCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttact ... tttgttgcagCCCGACACAGTGACAGGAGACATTGTATTCGTTTTGCAACTGAAGGAGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGAAGGTGGTGCAGGATAAGAAAGTGTTGGAGGTTCATGTAGAGAAGGGCATGGCGCATGGGCAGAAGATTACTTTCCAAGGCGAGGCTGATGAGGCGgtgcgttactctccgtgcgttcaaggcgtgctcttctgacaacaaatttcgtagaagtttttgtgaacaggataacgcttggatgtgtatatggattgtctgatacgaaaagttaatgttattctggaaacatgctgacggttagattgcattttgtgtgatcgatgtgtttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT