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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCAGGATCAACTGCCTCCACGGCTGTTCTGGTTGGAGATCGTCTACTTGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgtaacttctcagtggctttagctatcagtcaactccaccaatctatttcaagattacttgtttagaattttagggtcatattagcgcctttc...

Basic information

species Physcomitrella patens
transcript PP1S174_123V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208395056|gb|DC920469.1|DC920469
EST:     GTGACTCAAGGGCTGTCA-TTGTATCGCAGGAAAAG                         CGANTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: GTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208377763|gb|DC940875.1|DC940875
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGANCGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208378846|gb|DC927548.1|DC927548
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208396538|gb|DC915850.1|DC915850
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208366958|gb|DC951445.1|DC951445
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208358259|gb|DC939399.1|DC939399
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208352848|gb|DC917812.1|DC917812
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208382176|gb|DC914823.1|DC914823
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCCCANGAAAAN                         CGATNGCCCTT-CCACTG
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTG
EST: gi|208381088|gb|DC903916.1|DC903916
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|162254449|gb|FC430662.1|FC430662
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208397850|gb|DC916171.1|DC916171
EST:     ATGTANGTGACTCAAGGGCTGTCA-TTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: ATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208354531|gb|DC953881.1|DC953881
EST:     TGTTGCCCATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGANTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208386007|gb|DC956523.1|DC956523
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208355611|gb|DC906591.1|DC906591
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGANCGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208386792|gb|DC937184.1|DC937184
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|100412818|gb|BY992451.1|BY992451
EST:     TGTTGCCAATGTAGGTGACTCANGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGGAC-ACAAAACCAA-TCGATCGGATGAACGACA
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTG-ACCACAAA-CCAAATCGATCGGATGAACGACA
EST: gi|208364824|gb|DC957875.1|DC957875
EST:     ATGTAGGNGACTCAAGGGCTGTCA-TTGTATCGCA-GAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: ATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208356189|gb|DC902225.1|DC902225
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCACTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208357765|gb|DC902303.1|DC902303
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208351894|gb|DC913793.1|DC913793
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208390818|gb|DC938397.1|DC938397
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCCTTTCCACTGACCACAAACCAAATCNATCGGATGAACGACAA
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCC-TTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAA
EST: gi|37852052|gb|BJ610060.1|BJ610060
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208354285|gb|DC957463.1|DC957463
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|100404154|gb|BY955282.1|BY955282
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCANCAA-CCAAATCGATCGGATGAACGACAA
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCA-CAAACCAAATCGATCGGATGAACGACAA
EST: gi|208377647|gb|DC932183.1|DC932183
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|208361054|gb|DC946687.1|DC946687
EST:     TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: gi|37832174|gb|BJ590186.1|BJ590186
EST:     TGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG                         CGATTGCCNTTTCCACTGACCACAANCCAAATCGATCGGATGAACGACAAC
genomic: TGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC