1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGCACTTCTCCGGACGCTGACTTGAGATCAAGATTCTTGCTTAACACTGGCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAGgtaactcagccctggcttcttagacttgaattcacttcttaaacctccttcgttttaggaaactcgctgtttcttctacaagtggtactgtacctacggaatgtgtaccgtgcctcagttttgttcgctaattgctgatgtgatcgcag
species | Physcomitrella patens |
transcript | PP1S170_67V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAG ATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAAAAAAGCAGTAAGGEST: gi|162169620|gb|FC345560.1|FC345560
genomic: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAGgtaactcagc ... gtgatcgcagATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAGAAAAGCAGTAAGG
EST: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAG ATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAGAAAAGCAGTAAGGEST: gi|162153612|gb|FC329654.1|FC329654
genomic: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAGgtaactcagc ... gtgatcgcagATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAGAAAAGCAGTAAGG
EST: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAG ATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAGAAAAGCAGTAAGGEST: gi|162193034|gb|FC369404.1|FC369404
genomic: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAGgtaactcagc ... gtgatcgcagATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAGAAAAGCAGTAAGG
EST: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAG ATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAGAAAAGCAGTAAGGEST: gi|162177252|gb|FC353409.1|FC353409
genomic: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAGgtaactcagc ... gtgatcgcagATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAGAAAAGCAGTAAGG
EST: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAG ATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAGAAAAGCAGTAAGGEST: gi|162171951|gb|FC349036.1|FC349036
genomic: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAGgtaactcagc ... gtgatcgcagATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAGAAAAGCAGTAAGG
EST: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAG ATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAGAAAAGCAGTAAGGEST: gi|162179210|gb|FC355675.1|FC355675
genomic: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAGgtaactcagc ... gtgatcgcagATTCGGTGGGAGGCACCTATGGTCAATGCGAGGCTGAGAAAAGCAGTAAGG
EST: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAG ATTCGGTGGGAGGCACCTATGGTCA
genomic: GCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAGgtaactcagc ... gtgatcgcagATTCGGTGGGAGGCACCTATGGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCACTTCTCCGGACGCTGACTTGAGATCAAGATTCTTGCTTAACACTGGCATTGCTGCTCTTGAGCAGGCAGACGTTTGTCTCTTGGTTGGAACTCAGgtaactcagccctggcttcttagacttgaattcacttcttaaacctccttcgttttaggaaactcgctgtttcttctacaagtggtactgtacctacggaatgtgtaccgtgcctcagttttgttcgctaattgctgatgtgatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG