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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACTTAGTACCCCTTCGAGCTTACTACTTCTCGAAAGACGAGAAGCTCCTCGTGTATGACTACATGCCAATGGGTAGCCTGTCAGCGCTTCTCCATGgtaggttctctgtctccttgcaacgcagttctactggtatgcttagatttcatgtttgtgaatgaaagccgatctcagctggcgtgttattgattgatgactgttcag

Basic information

species Physcomitrella patens
transcript PP1S170_56V6.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S170_56V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G050548_T01 (Zea mays), 5'ss of exon 1
AAGAACTTAGTACCCCTTCGAGCTTACTACTTCTCGAAAGACGAGAAGCTCCTCGTGTATGACTACATGCCAATGGGTAGCCTGTCAGCGCTTCTCCATGgtaggttctctgtctccttgcaacgcagttctactggtatgcttagatttcatgtttg-tgaatgaaagccgatctcagctggcgtgttattgattgatgactgttcag
  |||| |  | ||| | || || ||||||||||| || ||||||||||||||||| || |||||| | || |  || ||||| || ||  | ||||| |||  || | |   ||| || |  |   |  ||     |  | |    |  | |   || || |    |  |||| |    ||   | || ||  ||  |          
CGGAACGTGCTCCCCGTCCGCGCCTACTACTTCTCCAAGGACGAGAAGCTCCTCGTCTACGACTACCTCCCCAACGGCAGCCTCTCTGCCATGCTCCACGgtcagtgcccaacctcttttcctcctcgcgcttgcattgcgttgccttagcgtagctgctgcactgtatgcgatttgccttgcttttttgtttttttttt---------

upper sequence: PP1S170_56V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G119717_T01 (Zea mays), 5'ss of exon 2
AAGAACTTAGTACCCCTTCGAGCTTACTACTTCTCGAAAGACGAGAAGCTCCTCGTGTATGACTACATGCCAATGGGTAGCCTGTCAGCGCTTCTCCATGgtaggttctctgtctccttgcaacgcagttct-actggtatgcttagatttcatgtttgtgaatgaaagccgatctcagctggcgtgttattgattgatgactgttcag
 ||||| |  | ||| | || || ||||||||||| || ||||||||||||||||| || |||||| | || |  || ||||| || ||  | ||||| |||  ||   |   ||| || || |   |  || |||||    |||        ||| ||| | ||    |||   ||||  ||  ||  | |  ||  |   ||| || 
CAGAACGTGCTCCCCATCCGCGCCTACTACTTCTCCAAGGACGAGAAGCTCCTCGTCTACGACTACCTCCCCAACGGCAGCCTCTCTGCCATGCTCCACGgtcagtgtccaacctcttttcatcctcgcgcttactggagatcttg-----tctgtgtgttactgtggaccggaatcag--ggattgaaaatc-ttactatatgtgca-

upper sequence: PP1S170_56V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G438841_T01 (Zea mays), 5'ss of exon 5
AAGAACTTAGTACCCCTTCGAGCTTACTACTTCTCGAAAGACGAGAAGCTCCTCGTGTATGACTACATGCCAATGGGTAGCCTGTCAGCGCTTCTCCATGgtaggttctctgtctccttgcaacgcagttct-actggtatgcttagatttcatgtttgtgaatgaaagccgatctcagctggcgtgttattgattgatgac-tgttcag
  |||| |  | ||| | || || ||||||||||| || ||||||||||||||||| || |||||| | || |  || ||||| || ||  | ||||| |||  ||   |   ||| || || |   |  || |||||       |||| |  ||||||||  | |  |  || |  |    | |  | |     | |  |  ||| |||
CGGAACATGCTCCCCATCCGCGCCTACTACTTCTCCAAGGACGAGAAGCTCCTCGTCTACGACTACCTCCCCAACGGCAGCCTCTCTGCCATGCTCCACGgtcagtgtccaacctcttttcatcctcgcgcttactgg-------agatct--tgtttgtgtgttactgtggaccagaatcagggattgaaaatcttactatatgtgcag

upper sequence: PP1S170_56V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv08s0040g00060.t01 (Vitis vinifera), 5'ss of exon 1
AAGAACTTAGTACCCCTTCGAGCTTACTACTTCTCGAAAGACGAGAAGCTCCTCGTGTATGACTACATGCCAATGGGTAGCCTGTCAGCGCTTCTCCATGgtaggttctct---gtctccttgcaacg----cagttctactggtatgcttagatttcatgtttgtgaatg-aaagccgatctcagctggcgtgttattgattgatgactgttcag----------------------------------------------------
   ||  | || || ||||| |||||||||| ||| || || ||||||||||| || |||||||||||  |    || ||| |||  || ||  | ||||||| | ||| |    | |||||          | |||||     |    | |   |  |  | |   ||     |   | ||| |   |     | |  ||    ||||| |||                                                      
CCAAATGTCGTGCCTCTTCGTGCTTACTACTACTCAAAGGATGAGAAGCTCCTGGTTTATGACTACATAACGGGCGGCAGCTTGTTTGCACTATTGCATGgtatgctctatccaatatccttctgtttttttctgttctttcattcccttgaatatagaaatatagaaacacgtaaatgctcttactagctacataa--gaaaagtgactcttctcccaaaataattcctcattcatcacatctttcttttattctaattgattacag

upper sequence: PP1S170_56V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv14s0006g01080.t01 (Vitis vinifera), 5'ss of exon 1
AAGAACTTAGTACCCCTTCGAGCTTACTACTTCTCGAAAGACGAGAAGCTCCTCGTGTATGACTACATGCCAATGGGTAGCCTGTCAGCGCTTCTCCATGgtaggttctctgtctccttgcaacgcagttctactggtatgcttagatttcatgtttgtgaatgaaagccgatctcagctggcgtgttattgattgatgactgttcag
 |||| || || || ||  | ||||||||||     || || ||||||||  | || ||||| || ||||||||||| |||||||| |||||||| ||||||  |   |   |||  ||  |   || || |     | |  |   ||||| | ||| |   || | |   || |    ||    |||  | ||  |||| | ||   
GAGAATTTGGTCCCACTCAGGGCTTACTACTATAGCAAGGATGAGAAGCTTATTGTATATGATTATATGCCAATGGGAAGCCTGTCTGCGCTTCTGCATGgtgagcatttcttcttttttgatttcaattatgtgtttgtcttcccatttccttttttt---tggagggtcattttga-tgattagtttcttatc-atgagtttt---