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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCGGAGGGAGACTTGACGCGTATGCGAGGCACCATCGGTGGACCTCATGGGACTCCTTACGAAGGTGGTGTCTTCATCGTGGACATCCAACTGCCATgtgagtatcactctgtgaacttatcctcaataggccacaaccctaatcctggagtgatcaaccctccctcctctcaactagtgcgcatgccatgcttgta...

Basic information

species Physcomitrella patens
transcript PP1S16_326V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18334209|gb|BJ166225.1|BJ166225
EST:     CGTGGACATCCAACTGCCAT                         CTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
genomic: CGTGGACATCCAACTGCCATgtgagtatca ... atccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
EST: gi|208392176|gb|DC949580.1|DC949580
EST:     TGGGACTCCTTACGAAGGTGGTGTCTTCATCGTGGACATCCAACTGCCAT                         CTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
genomic: TGGGACTCCTTACGAAGGTGGTGTCTTCATCGTGGACATCCAACTGCCATgtgagtatca ... atccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
EST: gi|208374828|gb|DC956101.1|DC956101
EST:     GGACTCCTTACGAAGGTGGTGTCTTCATCGTGGACATCCAACTGCCAT                         CTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
genomic: GGACTCCTTACGAAGGTGGTGTCTTCATCGTGGACATCCAACTGCCATgtgagtatca ... atccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
EST: gi|67726239|gb|BJ976498.1|BJ976498
EST:     CTTCATCGTGGACATCCAACTGCCAT                         CTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
genomic: CTTCATCGTGGACATCCAACTGCCATgtgagtatca ... atccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG