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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTCGAGTCCAACCTCCAGCTGCAGCTCCAATTGTTGGAGCCGCTCCTGCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatttccacaatactcagttttctataatacttgtgtttgcattacggacaagagtgtgaaagggtcttcgttgcgtggtactcagacatttgatcgaaagcagtgaaattttgaaaggaatactgtgataacttacatatttggttcaagcag

Basic information

species Physcomitrella patens
transcript PP1S169_73V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100379420|gb|BY986628.1|BY986628
EST:     GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCG                         GTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
genomic: GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatt ... gttcaagcagGTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
EST: gi|162266559|gb|FC442790.1|FC442790
EST:     GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCG                         GTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
genomic: GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatt ... gttcaagcagGTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
EST: gi|162160839|gb|FC337661.1|FC337661
EST:     GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCG                         GTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
genomic: GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatt ... gttcaagcagGTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
EST: gi|162183681|gb|FC359909.1|FC359909
EST:     GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCG                         GTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
genomic: GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatt ... gttcaagcagGTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
EST: gi|18350303|gb|BJ182354.1|BJ182354
EST:     GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCG                         GTATCAACCAAGTGCTGCAG
genomic: GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatt ... gttcaagcagGTATCAACCAAGTGCTGCAG
EST: gi|18344551|gb|BJ176592.1|BJ176592
EST:     GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCG                         GTATCAACCAAGTGCTGCAGTAAT
genomic: GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatt ... gttcaagcagGTATCAACCAAGTGCTGCAGTAAT
EST: gi|18344205|gb|BJ176244.1|BJ176244
EST:     GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCG                         GTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
genomic: GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatt ... gttcaagcagGTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
EST: gi|18364666|gb|BJ196739.1|BJ196739
EST:     GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCG                         GTATCAACCAAGTGCTGCAGT
genomic: GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatt ... gttcaagcagGTATCAACCAAGTGCTGCAGT
EST: gi|162198130|gb|FC373080.1|FC373080
EST:     GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCG                         GTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
genomic: GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatt ... gttcaagcagGTATCAACCAAGTGCTGCAGTAATGAAGAGGCTCCCAAGTAAATGGCCAAA
EST: gi|18352311|gb|BJ184365.1|BJ184365
EST:     GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCG                         GTATCAACCAAGTGCTGCAGTAATGA
genomic: GCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatt ... gttcaagcagGTATCAACCAAGTGCTGCAGTAATGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCTCGAGTCCAACCTCCAGCTGCAGCTCCAATTGTTGGAGCCGCTCCTGCAGTCCCTGCAGTGGATCGCACTTCTACTGCAATTACAGCGGCTGATCGgtatgtgatttccacaatactcagttttctataatacttgtgtttgcattacggacaagagtgtgaaagggtcttcgttgcgtggtactcagacatttgatcgaaagcagtgaaattttgaaaggaatactgtgataacttacatatttggttcaagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT