1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGTCGCAGCAGGAGCCAACCCAGTTCAAATTACCAGGGGCATTGACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgataacgtgccatttctaaaatagttcctcactttctgtgtttcgttctgggggtttctctgagcgagtttttgtctccaagtaaagtatgtgccctttggttcttccctttctttgcactacacagctgaattggatgtcgttggcag
species | Physcomitrella patens |
transcript | PP1S15_485V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162250146|gb|FC427871.1|FC427871
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162153515|gb|FC329609.1|FC329609
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162150983|gb|FC327879.1|FC327879
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162173179|gb|FC348726.1|FC348726
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162183969|gb|FC359339.1|FC359339
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162155281|gb|FC331218.1|FC331218
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162166168|gb|FC343411.1|FC343411
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162153382|gb|FC329892.1|FC329892
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162184449|gb|FC359195.1|FC359195
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162175371|gb|FC352297.1|FC352297
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162171512|gb|FC347814.1|FC347814
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162157139|gb|FC333709.1|FC333709
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162180842|gb|FC358343.1|FC358343
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162173824|gb|FC349416.1|FC349416
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162256596|gb|FC432906.1|FC432906
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|67574539|gb|BJ947363.1|BJ947363
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTEST: gi|162154100|gb|FC330543.1|FC330543
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCT
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162150359|gb|FC326631.1|FC326631
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162255427|gb|FC431841.1|FC431841
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAACEST: gi|162154271|gb|FC330402.1|FC330402
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
EST: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAG GTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
genomic: ACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgata ... tcgttggcagGTAGAAGACAGCGAATTGGCTGACGTTGCTGCTGTTAGTGCCGGCAACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTCGCAGCAGGAGCCAACCCAGTTCAAATTACCAGGGGCATTGACAGAACTGTTATTGCCTTGGTGAAGGAGCTGAAGAACATGTCAAAGGAGgtgattgataacgtgccatttctaaaatagttcctcactttctgtgtttcgttctgggggtttctctgagcgagtttttgtctccaagtaaagtatgtgccctttggttcttccctttctttgcactacacagctgaattggatgtcgttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG