1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATTGGGGTTGGCGTCTGCACTGTGACAGACGTTAGTGTTAATCTTAAGGGATTTTTAGCAGCTGTTACTGCAGTAATTTCTACTTCACTCCAACAGATTgtaagttaccactcactagatttttttctgctgagttagagagtgtcatagtacatcttattacgtctagtacagaaattctgaaatcctttgtcggatc...
species | Physcomitrella patens |
transcript | PP1S15_388V6.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTCACTCCAACAGATT TACATTGGTGCACTGCAAAAGAAGCACAGTTGTGGCTCTTTCGAACTTTTAEST: gi|162214631|gb|FC390662.1|FC390662
genomic: CTTCACTCCAACAGATTgtaagttacc ... cattctgcagTACATTGGTGCACTGCAAAAGAAGCACAGTTGTGGCTCTTTCGAACTTTTA
EST: GCAGCTGTTACTGCAGTAATTTCTACTTCACTCCAACAGATT TACATTGGTGCACTGCAAAAGAAGCACAGTTGTGGCTCTTTCGAACTTTTAEST: gi|18346553|gb|BJ178598.1|BJ178598
genomic: GCAGCTGTTACTGCAGTAATTTCTACTTCACTCCAACAGATTgtaagttacc ... cattctgcagTACATTGGTGCACTGCAAAAGAAGCACAGTTGTGGCTCTTTCGAACTTTTA
EST: GATTTTTAGCAGCTGTTACTGCAGTAATTTCTACTTCACTCCAACAGATT TACATTGGTGCACTGCAAAAGAAGCACAGTTGTGGCTCTTTCGAACTTTTA
genomic: GATTTTTAGCAGCTGTTACTGCAGTAATTTCTACTTCACTCCAACAGATTgtaagttacc ... cattctgcagTACATTGGTGCACTGCAAAAGAAGCACAGTTGTGGCTCTTTCGAACTTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGGGGTTGGCGTCTGCACTGTGACAGACGTTAGTGTTAATCTTAAGGGATTTTTAGCAGCTGTTACTGCAGTAATTTCTACTTCACTCCAACAGATTgtaagttaccactcactagatttttttctgctgagttagagagtgtcatagtacatcttattacgtctagtacagaaattctgaaatcctttgtcggatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG