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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGGGCCAAATTGAGCGGTATCTGAAGCAAGCTGTCGTGGACAAGAATCCTGTTGTTTCCAGCGCGGCACTTGTCAGCGGTATCCATCTTCTACAGgtactattctgaagagggattattattactttcaagaactttcaagatccttaggcctgtattgcaagattatatttgtattctgatatttttgttccct...

Basic information

species Physcomitrella patens
transcript PP1S15_298V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S15_298V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G178618_T01 (Zea mays), 5'ss of exon 5
GCTGTTGGGCCAAATTGAGCGGTATCTGAAGCAAGCTGTCGTGGACAAGAATCCTGTTGTTTCCAGCGCGGCACTTGTCAGCGGTATCCATCTTCTACAGgtactattctgaagagggattat-tattactttcaagaactttcaagatccttaggcctgtattgcaagattatatttgtattctgatatttttgttccct------
 ||  |   |||||| ||| ||||| ||||||||||  | || |||||||||||||||||| |||| ||||| ||||| || || ||| |  | || || ||| | | ||| ||    ||| | |  | |  |     |  ||     |  || |  | |   |  |   || ||||    ||   | || |||||    |      
CCTTCTCACCCAAATCGAGAGGTATTTGAAGCAAGCCATTGTTGACAAGAATCCTGTTGTTGCCAGTGCGGCCCTTGTTAGTGGCATCTACTTGCTTCAAgta-tgtcctgcagttatattttgtgctccagttggatatattgttactagttggtgcagctatagatatttttattatgttttccacatgtttgtattattggcag

upper sequence: PP1S15_298V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G036034_T01 (Zea mays), 5'ss of exon 5
GCTGTTGGGCCAAATTGAGCGGTATCTGAAGCAAGCTGTCGTGGACAAGAATCCTGTTGTTTCCAGCGCGGCACTTGTCAGCGGTATCCATCTTCTACAGgtactattctgaagagggattattattactttcaagaactttcaagatccttaggcctgtattgcaagattatatttgtattctgatatttttgttccct
 ||  |   |||||| ||| ||||| ||||||||||  | || |||||||||||||||||| |||| || || ||||| || || ||| |  | || || ||| | | |||        ||     || | | |  |  ||     | | ||||  || | ||   |  || |     | ||    || | |||      
TCTTCTCACCCAAATCGAGAGGTATTTGAAGCAAGCCATTGTTGACAAGAATCCTGTTGTTGCCAGTGCAGCCCTTGTTAGTGGCATCTACTTGCTTCAAgta-tgtcctgtgctccacttggatatattgttactagtttgtggcagctttagttcttttttattatgttttccacatgttt--gtactattggcag--