1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAACATGTATTCCGACATGAGAGAGGAAGCTCGTGATCACGCACGTGTCCGAAATGCCTATTTTGAGCAGgtgcgtgttctgtaccttcttgggacattcagcagagtttgtaggaggaatttagtttcgaaattattacttcgcgagcttgtgcaatcaagtttcaact...
species | Physcomitrella patens |
transcript | PP1S159_78V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGAGGAAGCTCGTGATCACGCACGTGTCCGAAATGCCTATTTTGAGCAG GCAAGACAAGCATATCTTGCAGGAAACAAAGCTCTGGCAAAAGAATTGAGTEST: gi|162240589|gb|FC414400.1|FC414400
genomic: GAGAGGAAGCTCGTGATCACGCACGTGTCCGAAATGCCTATTTTGAGCAGgtgcgtgttc ... tttcaaacagGCAAGACAAGCATATCTTGCAGGAAACAAAGCTCTGGCAAAAGAATTGAGT
EST: GAGAGGAAGCTCGTGATCACGCACGTGTCCGAAATGCCTATTTTGAGCAG GCAAGACAAGCATATCTTGCAGGAAACAAAGCTCTGGCAAAAGAATTGAGTEST: gi|162240590|gb|FC414401.1|FC414401
genomic: GAGAGGAAGCTCGTGATCACGCACGTGTCCGAAATGCCTATTTTGAGCAGgtgcgtgttc ... tttcaaacagGCAAGACAAGCATATCTTGCAGGAAACAAAGCTCTGGCAAAAGAATTGAGT
EST: GAGAGGAAGCTCGTGATCACGCACGTGTCCGAAATGCCTATTTTGAGCAG GCAAGACAAGCATATCTTGCAGGAAACAAAGCTCTGGCAAAAGAATTGAGT
genomic: GAGAGGAAGCTCGTGATCACGCACGTGTCCGAAATGCCTATTTTGAGCAGgtgcgtgttc ... tttcaaacagGCAAGACAAGCATATCTTGCAGGAAACAAAGCTCTGGCAAAAGAATTGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACATGTATTCCGACATGAGAGAGGAAGCTCGTGATCACGCACGTGTCCGAAATGCCTATTTTGAGCAGgtgcgtgttctgtaccttcttgggacattcagcagagtttgtaggaggaatttagtttcgaaattattacttcgcgagcttgtgcaatcaagtttcaact
- - - - - - - - - - GAGAGG
- - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG