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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCAGCGTGGCTTCTTGATAAGAAGAACGCTGACTTCTCTACGAAACTTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAGgtataaacaaaatggggttatctcagatcttctctcgatgttttccgagactggtatagattccctttgctgcgcttcgagctttgcggttcatttttgt...

Basic information

species Physcomitrella patens
transcript PP1S152_87V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196622|gb|FC374912.1|FC374912
EST:     TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAG                         AGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
genomic: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
EST: gi|162244981|gb|FC424939.1|FC424939
EST:     TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAG                         AGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
genomic: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
EST: gi|100352594|gb|BY945350.1|BY945350
EST:     TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAG                         AGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
genomic: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
EST: gi|100419828|gb|BY957728.1|BY957728
EST:     TAGAGTGTCACTTGGAACCGACTNCA-GAGTATCTGCTAAATCAATTCAG                         AGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
genomic: TAGAGTGTCACTTGGAACCGACT-CAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
EST: gi|162159476|gb|FC336265.1|FC336265
EST:     TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAG                         AGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
genomic: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
EST: gi|100397210|gb|BY972385.1|BY972385
EST:     TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAG                         AGTGCCGTAGCTCGAGAAATATCTGGAGCTGGATTGGATGTCATTGAATAT
genomic: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT