1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATTGAAGCTAAGCAAGTTGCTGCCCAGGACGCTGAGAGGGCTAAATTTGTGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatcttgactcttgcttgatttctttcagctatttacagtttgggaaggggtttgtaagaggctgtggatgttggtgttcattccgcaaggaagaccattgccaagtttggtcggatagtgaaatttcctttttttgtgtactccag
species | Physcomitrella patens |
transcript | PP1S14_33V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAG GGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCAEST: gi|37847087|gb|BJ605095.1|BJ605095
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatc ... tgtactccagGGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCA
EST: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAG GGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCAEST: gi|7286652|gb|AW599139.1|AW599139
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatc ... tgtactccagGGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCA
EST: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAG GGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCAEST: gi|37849831|gb|BJ607839.1|BJ607839
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatc ... tgtactccagGGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCA
EST: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAG GGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCAEST: gi|208367370|gb|DC951288.1|DC951288
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatc ... tgtactccagGGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCA
EST: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAG GGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCAEST: gi|162158550|gb|FC334553.1|FC334553
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatc ... tgtactccagGGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCA
EST: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAG GGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCAEST: gi|37822308|gb|BJ580374.1|BJ580374
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatc ... tgtactccagGGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCA
EST: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAG GGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCAEST: gi|15327131|gb|BI487615.1|BI487615
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatc ... tgtactccagGGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCA
EST: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAG GGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCAEST: gi|67578792|gb|BJ950959.1|BJ950959
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatc ... tgtactccagGGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCA
EST: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAG GGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCAEST: gi|208386236|gb|DC952949.1|DC952949
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatc ... tgtactccagGGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCA
EST: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAG GGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCA
genomic: TGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatc ... tgtactccagGGAGAGGCCAAGAGTGCTCAACTCATCGGTGAAGCCATTTCAAACAATCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGAAGCTAAGCAAGTTGCTGCCCAGGACGCTGAGAGGGCTAAATTTGTGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatcttgactcttgcttgatttctttcagctatttacagtttgggaaggggtttgtaagaggctgtggatgttggtgttcattccgcaaggaagaccattgccaagtttggtcggatagtgaaatttcctttttttgtgtactccag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG