Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTCAGCTAGCGTTGAAGCATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAGgtaagtcggatattttgcagacaattcgtctaaattgaagacttgattgtggcactcggattgttgtggcaccagtgctctttgtttacattttgtcagatcagcaatattttttgacttttaaatgaactgttgcattgttatccgcag

Basic information

species Physcomitrella patens
transcript PP1S14_318V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162270585|gb|FC446510.1|FC446510
EST:     CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAG                         TCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
genomic: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAGgtaagtcgga ... ttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
EST: gi|162235944|gb|FC411687.1|FC411687
EST:     CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAG                         TCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
genomic: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAGgtaagtcgga ... ttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
EST: gi|162159573|gb|FC335751.1|FC335751
EST:     CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAG                         TCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
genomic: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAGgtaagtcgga ... ttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
EST: gi|18328677|gb|BJ160682.1|BJ160682
EST:     CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAG                         TCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
genomic: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAGgtaagtcgga ... ttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
EST: gi|100400831|gb|BY972965.1|BY972965
EST:     CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAG                         TCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
genomic: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAGgtaagtcgga ... ttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA