1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTCACATAGTACTAGATGGTTACAACGCCCCAGTCACTGCCGGAAACTTTGTTGATCTTGTTGAGCGCAGATTTTATGATGGCATGGAAATTCAACGATgtgagttccgcaaatcacatcgatttagccgtcaatgattcgctttcgtagatgataattcagagctctcttgctccaataagaatcctaatacaagctgggtgatgtcaaggtatgctttaggagtttaaagatatttttgtggacactttttattgtttcag
species | Physcomitrella patens |
transcript | PP1S149_77V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTTGATCTTGTTGAGCGCAGATTTTATGATGGCATGGAAATTCAACGAT CGGATGGATTTGTGCTCCAAACTGGAGACCCCGATGGACCAGCTGAAGGGTEST: gi|162232024|gb|FC409098.1|FC409098
genomic: TGTTGATCTTGTTGAGCGCAGATTTTATGATGGCATGGAAATTCAACGATgtgagttccg ... attgtttcagCGGATGGATTTGTGCTCCAAACTGGAGACCCCGATGGACCAGCTGAAGGGT
EST: TGTTGATCTTGTTGAGCGCAGATTTTATGATGGCATGGAAATTCAACGAT CGGATGGATTTGTGCTCCAAACTGGAGACCCCGATGGACCAGCTGAAGGGTEST: gi|162169392|gb|FC345748.1|FC345748
genomic: TGTTGATCTTGTTGAGCGCAGATTTTATGATGGCATGGAAATTCAACGATgtgagttccg ... attgtttcagCGGATGGATTTGTGCTCCAAACTGGAGACCCCGATGGACCAGCTGAAGGGT
EST: TGTTGATCTTGTTGAGCGCAGATTTTATGATGGCATGGAAATTCAACGAT CGGATGGATTTGTGCTCCAAACTGGAGACCCCGATGGACCAGCTGAAGGGT
genomic: TGTTGATCTTGTTGAGCGCAGATTTTATGATGGCATGGAAATTCAACGATgtgagttccg ... attgtttcagCGGATGGATTTGTGCTCCAAACTGGAGACCCCGATGGACCAGCTGAAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCACATAGTACTAGATGGTTACAACGCCCCAGTCACTGCCGGAAACTTTGTTGATCTTGTTGAGCGCAGATTTTATGATGGCATGGAAATTCAACGATgtgagttccgcaaatcacatcgatttagccgtcaatgattcgctttcgtagatgataattcagagctctcttgctccaataagaatcctaatacaagctgggtgatgtcaaggtatgctttaggagtttaaagatatttttgtggacactttttattgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA