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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGCAACATAAATTGGGCAAAGCGCACAAAATGTAACATCTGCAACACTGCCAAACCTGGTTTCAATGAAGGCGGTGCCAGgtgttttgtcttgatgtgctgcatcttatatctcgtcaaattcagtaggtttgtaatttcaagcttcggaaaacttcactattatggtgaaatcttgtcctgacataatggccctttcttgctattttcctctttctgtttttgctacacag

Basic information

species Physcomitrella patens
transcript PP1S148_65V6.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S148_65V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os07g19560.2 (Oryza sativa), 5'ss of exon 5
GTGTGGCAACATAAATTGGGCAAAGCGCACAAAATGTAACATCTGCAACACTGCCAAACCTGGTTTCAATGAAGGCGGTGCCAGgtgttttgtcttgatgtgctgcatcttatatctcgtcaaattcagtaggtttgtaatttcaagcttcggaaaacttcactattatggtgaaatcttgtcctgacataatggccctttcttgctattttcctctttctgtttttgctacacag
||||||||||||||||||||||||||| |  |||||||| ||||| |||||  |||| || |||  ||||||||| ||||  ||||            | |||  || | |  || | |||| || ||  ||     || ||  ||  |        | ||    ||    |||| | | ||                                                      
GTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGgtaagagtaagacgtatgc-acaacctgcatgt-gtcatatccatcagtcaaatagttgaaatatattatttgcctctgctttggcatgaattatagtgagc--------------------------------------------------

upper sequence: PP1S148_65V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os09g12800.1 (Oryza sativa), 5'ss of exon 5
GTGTGGCAACATAAATTGGGCAAAGCGCACAAAATGTAACATCTGCAACACTGCCAAACCTGGTTTCAATGAAGGCGGTGCCAGgtgttttgtcttgatgtgctgcatcttatatctcgtcaaattcagtaggtttgtaatttcaagcttcggaaaacttcactattatggtgaaatcttgtcctga--cataatggccctttcttgctattttcctctttctgtttttgctacacag
||||||||||||||||||||||||||| |  |||||||| ||||| |||||  | || || |||  ||||||||| ||||  ||||          ||  |||  || | |  || | | ||  |||| | | ||||  | || ||   ||| ||   |  | |||| ||        ||| | |||   ||  ||  |                                       
GTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACTAAGCCAGGTCACAATGAAGGTGGTGTGAGgtaa--------gacatgc-acaacctgcatgtgg-catgttcatt-gctttgccagttaaatagtcgaaa---tgtattatt-tgcctttgctttggcatgaactatggtgagc---------------------------------------