1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCGgtacagtccttttctcgtctcttcaatctgttccaccatgcagcgtttaattttaggttaggcttgatgggaggaggagatgttgcaataaaatctggctttctgcatttatctatgcag
species | Physcomitrella patens |
transcript | PP1S13_423V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCG GTGGGACTTCTCAACGTGGACGGCTTTTATGACACATTGCTCACATTTTTCEST: gi|208354753|gb|DC918723.1|DC918723
genomic: AACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCGgtacagtcct ... atctatgcagGTGGGACTTCTCAACGTGGACGGCTTTTATGACACATTGCTCACATTTTTC
EST: AACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCG GTGGGACTTCTCAACGTGGACGGCTTTTATGACACATTGCTCACATTTTTCEST: gi|208358562|gb|DC946523.1|DC946523
genomic: AACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCGgtacagtcct ... atctatgcagGTGGGACTTCTCAACGTGGACGGCTTTTATGACACATTGCTCACATTTTTC
EST: AACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCG GTGGGACTTTTCAACGTGGACGGCTTTTATGACACATTGCTCACATTTTTCEST: gi|208400182|gb|DC904830.1|DC904830
genomic: AACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCGgtacagtcct ... atctatgcagGTGGGACTTCTCAACGTGGACGGCTTTTATGACACATTGCTCACATTTTTC
EST: AACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCG GTGGGACTNCTCAACGTGGACGGCTTTTATGACACATTGCTCACATTTTTCEST: gi|67694217|gb|BJ954450.1|BJ954450
genomic: AACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCGgtacagtcct ... atctatgcagGTGGGACTTCTCAACGTGGACGGCTTTTATGACACATTGCTCACATTTTTC
EST: AACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCG GTGGGACTTCTCAACGTGGACGGCTTTTATGACACATTGCTCACATTTTTC
genomic: AACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCGgtacagtcct ... atctatgcagGTGGGACTTCTCAACGTGGACGGCTTTTATGACACATTGCTCACATTTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCGgtacagtccttttctcgtctcttcaatctgttccaccatgcagcgtttaattttaggttaggcttgatgggaggaggagatgttgcaataaaatctggctttctgcatttatctatgcag
- - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - CAGCTC