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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag

Basic information

species Physcomitrella patens
transcript PP1S13_243V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os12g05900.1 (Oryza sativa), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
||||||||| ||||||||||||||||| |||||||| ||   | | ||||||||||| || ||||||||||| ||||| ||||| || |||||||||||||||       |  |   |||   |  |||  ||| |||   ||  ||||      |   || | ||| ||   | ||  | | || ||                                         
CTGGGCTGTTAATTTGATGGCTGATGTTGTCCAAGAAGAGCAAATAAACAAGATGAATGCGCGCAATATTGCCATGGTTTTTGCACCAAATATGACTCAGgtag------tgtgttatcctattgcgatcatggtactgatatttcatt---aggtggattctaactgtt-gtcacacat-gtaatgcag---------------------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os11g05540.1 (Oryza sativa), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
 ||||| || ||||| ||||||||||| |||||||| |||    | ||||||||||| ||||| || ||||| ||||| ||||| || ||||||||||||||||  ||   ||   ||     |    |  ||    || | |    |  | | ||  | |    | | | |  | ||   |                                               
GTGGGCAGTTAATTTAATGGCTGATGTTGTCCAAGAAGAACAGATAAACAAGATGAATGCTCGTAACATTGCTATGGTTTTTGCACCAAATATGACTCAGgtaatgcactgtc---ctaataataaacttatgat-tttaagtgtggtcgatgcttactgtcatgcacat-atgtaatgcag-----------------------------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os02g45600.1 (Oryza sativa), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggat-gctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
 |||||  ||||| ||||||| ||||| ||  || | |||     ||| ||||||||||||||||| ||||| ||||| ||||| || || |||||||||||     ||  || |  ||    | |  |   |     ||   | | || |||    |||  |    ||     || ||  || |||  || |       | | |                         
TTGGGCCATCAATCTGATGGCAGATGTTGTGGAACATGAAAACTACAATAAGATGAACGCTCGCAACATTGCTATGGTTTTTGCACCAAACATGACTCAGgt----tattctcaaaatctatttggctttatttattttttcttgctatctacagaatttgctat-ttcacagactaatcatgtaaca-taccatctcttttatag------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G113073_T01 (Zea mays), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaac--tgaagcctaacacctgtttcgacctctatatctgcag
||||||||| ||| ||||||| || ||||||||||| |||    | ||||||||||||| |||||||||||| |||||||| || || |||||||||||||||   |||  |   |     |  | |    | |||    |  |  || |||  ||      ||||  |    || | | | | ||||| ||  || ||                                
CTGGGCTGTGAATCTGATGGCCGACGTAGTCCAAGAAGAACACATAAACAAGATGAACGATCGCAATATTGCTATGGTCTTCGCACCAAATATGACTCAGgtattgcattgt--gctgatacgatagcgattagcaaactatcaatatatac--ttcacccatcacaatgatgctaactatagcacgcttacaatgcag--------------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G114192_T01 (Zea mays), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
||||||  | ||| ||||||| ||||| ||  |  | |||     ||||||||||||||| || || || || ||||| ||||| || |||||||||||||| |         |||   |  |||     ||    ||| |  |  ||  | | ||  | ||  || || ||| |         |||||||     |   |    || || |                 
CTGGGCAATTAATCTGATGGCCGATGTTGTAGAGCAAGAAAACTACAACAAGATGAACGCCCGGAACATCGCGATGGTTTTTGCGCCCAATATGACTCAGgttaact------gacacgcgtctta----ctatgtcttcag-attatacaaggttcatattatac-ctacacat---------acgctaatcctggtgcatt-tctcttccag---------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA03G35480.1 (Glycine max), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
 |||||  | || || ||||| ||||| |  |||   |||    | ||||||||||| || ||||||||||||||||| |||||||| || |||||||| |||||      ||    ||     |  ||| | | |      |    | |  |      ||||   | || |  || |     || |  |||   | | ||                            
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGCAATATTGCAATGGTTTTTGCTCCAAACATGACTCAAgtaagagtaaatcattttctattgtaaatg-tagtatacagttttgctcttagccccaatttttgttattgaattcgt----aaaagtcaacctcatcttattgg------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcact-tgaatacc-atttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
||||||| |  || | ||||||||||| ||  |||| || | | | ||||| ||||| ||| | |||||||||||||| |||||||| || |||||||||||| |         || | | | ||||||| |   | | | | |      |||   || | |||  | |  |    |  | |  |||   |   | |     |  |                         
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgctc------acatacacattggatgttaaaattgtcagtgtttgcttaatgttctatttgtatttgttggtttttatgtgaaattttttttattaaaagga-------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
 |||||  | || || ||||| ||||| |  |||   |||    | ||||||||||| || || |||||||||||||| ||||| || || |||||||| ||||| |    ||    |      |  ||| | | |   |  |    | |  |      ||||   | || |  ||||    |      ||    | | ||                            
TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgtaagactaaatcattttttgttgtaaatg-tagtatacggttctgctcttagccccaatttttgttattgagttcataccag----tcaaactcatcttattgg------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA03G42090.1 (Glycine max), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
||||||  ||||||||||||| || || ||  || | |||    ||||||| ||||| |||||||||||||| ||||| ||||| || || ||||| ||||| || || | |                |    |||  | || |    ||    | | || || | | ||    || | |   |  | | | | | ||  |  |  |  ||  || ||           
CTGGGCAATCAATTTGATGGCAGACGTTGTTGAACATGAACAGTTCAACAAAATGAATGCTCGCAATATTGCCATGGTTTTTGCGCCCAACATGACACAGgttagccaacat----------------tataagcaaataaagatgtattct--tctgttgtttattgttggtttc-tctcaaacagtttaattaggctcattatttagttgaacttcc----------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
 |||||| ||||| | ||||||||||| ||  |    |||  | | ||||||||||| ||||| || ||||||||||| ||||| ||||| |||||||||||||||  | || ||      |  |  |   ||    ||  ||    ||     |||  |        |    |  |||   |                                              
TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaagt--tttttgaatgaatctctaaagattg----tttgatgt-gttcgtattttggtaaatgacatcagtcaaattgcag----------------------------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT2G46710.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatct--tcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
 |||||  ||  | | ||||| ||||| ||  |  | |||    | ||||| ||||| ||||||||| | || |||||||||||||| ||||||||||| || ||| ||    | ||  |  |  ||  |||    || |||| |      |   ||  ||||    ||| | |     |||||      ||                                       
TTGGGCCATCGGTCTAATGGCGGATGTGGTGGAGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCTCCAAATATGACTCAAgtcagtaataaaattgaattttctttta-atga-aacagttgattctttagttatatagttttgaatctcatgaaaatgttttgatgttgtag--------------------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT4G03100.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagt-catcttcgacctcc--cccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
 ||||||||  || | ||||||||||| ||  |||| ||||     ||||| ||||| ||  | ||||| || ||||| |||||||||||||||||||||||||   ||   |  ||||     |  || ||         ||| ||     ||  ||||  || |  |  |    || | | | |                                              
TTGGGCTGTTGATCTTATGGCTGATGTTGTTGAAGAAGAAGAGTCTAACAAAATGAATGCAAGGAATATAGCCATGGTTTTTGCTCCTAATATGACTCAGgtaaaaacaaagttaacctttgttcaatgaataagaatcactgagtagttactaacatttgattcttgcattct--ctaactgtag----------------------------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
|||| |  ||||||||||| | |||||||| ||  | |||     |||||||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||   | | | |        |  | |  |  |   |      | | |  || |   | | |  || |    | |  || |   | |   |   |  | ||                             
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacatatcttgttctgtcgttttgttttaaggttctgctacatatggggtatcta-cagttggtatccaatgtgctagcctcactagctgactt----------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtc----atcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
||||||| |  || | ||||||||||| ||  | || || |   ||||||| ||||| ||  | |||||||||||||| |||||||| ||||||||||||||   |     |||||  |  |  |   |    |||    |||   | ||||  |      |   |  |         |  |||     | | |                                       
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatattaaatcttgaaaatttcttgttttagctaatgctttggt-ccatggatttcaataaatagaactccttttttgtttgatttcaccag--------------------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv06s0080g00580.t01 (Vitis vinifera), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctc-ccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
 |||||  ||||  | ||||| ||||| ||||| || ||     | ||||| ||||| || ||||| ||||||||||||||||| || || ||||||||||| ||      | |    | |  |||| |   || |     | ||    ||   || |     | |   |  |  | | | ||     || | || |   |||                           
TTGGGCCATCAACCTCATGGCAGATGTCGTCCAGGAGGAGCATCTAAACAAAATGAATGCACGCAACATTGCAATGGTCTTTGCACCAAACATGACTCAGgtgaggttgaatggtttacgcttcttgaaaattgtc---caagtagggatttgcatgtccagatgaaattgaa--tgaatatgacgttctcattgcattttaaat-------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ22564 (Selaginella moellendorffii), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
||||||  | ||| | ||||| || || | ||| || || |     |||||||||||| | || || || |||||||| |||||||| || |||||||||||| ||  || ||    |  |  ||||    |||   |||  | |  ||    | | | ||| |  |      | ||                                                    
CTGGGCGCTGAATCTCATGGCCGACGTCGCCCAGGAGGAGGCGTCAAACAAGATGAACTCCCGGAACATCGCAATGGTTTTTGCTCCCAACATGACTCAGgtacgt--tcctc----tttcatttggtgcttggtttttgttttcttttctgtaatgtatttccttttgctgtcccag---------------------------------------------------

upper sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ12967 (Selaginella moellendorffii), 5'ss of exon 4
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagt-catcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag
||||||  | ||| | ||||| || || | ||| || || |     |||||||||||| | || || || |||||||| |||||||| || |||||||||||| || | ||||  |  |    ||||| |  ||    ||   |  |  | | |  |||  |||  || | |                                                          
CTGGGCGCTGAATCTCATGGCCGACGTCGCCCAGGAGGAGGCGTCAAACAAGATGAACTCCCGGAACATCGCAATGGTTTTTGCTCCCAACATGACTCAGgtacgttcctctttcatttggttcttggtttttg---ttttgttttctgtaatgtatttccttttgctgtcccag-------------------------------------------------------