1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCCTACCCACGTGAAAGTGATGCTCATCCGCCGGCTTGCTGCAGCAGGCTTACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAGgtatttattacatgacaatcaccaagtcatcacacgaggaccaatgtatttgcccacatttcttgaagctgtagattggatattcccgttattgaaatcgattcgtcgtcgctgacgaatttgttgtattggcag
species | Physcomitrella patens |
transcript | PP1S138_43V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGTCCCCGAAATGGGTGCNTCAG CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGGEST: gi|162189221|gb|FC366730.1|FC366730
genomic: GTGTCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
EST: TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAG CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGGEST: gi|208361217|gb|DC957686.1|DC957686
genomic: TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
EST: GAAGCCACCAGCTTCGTGTTCCCCGAAATGGGTGCNTCAG CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGGEST: gi|162207542|gb|FC383995.1|FC383995
genomic: GAAGCCACCAGCTTCGTG-TCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
EST: TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAG CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGGEST: gi|162158070|gb|FC334978.1|FC334978
genomic: TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
EST: TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAG CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGGEST: gi|208379917|gb|DC927643.1|DC927643
genomic: TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
EST: CGTGTCCCCGAAATGGGTGCNTCAG CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
genomic: CGTGTCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTACCCACGTGAAAGTGATGCTCATCCGCCGGCTTGCTGCAGCAGGCTTACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAGgtatttattacatgacaatcaccaagtcatcacacgaggaccaatgtatttgcccacatttcttgaagctgtagattggatattcccgttattgaaatcgattcgtcgtcgctgacgaatttgttgtattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG