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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGATATGTTGCGTAGGAACGCACTTCGTGCTGATGCAATCAAGTGCTTCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaaggatttttcaagttcagtagaacttgcatgatcttattgttcctggatgataaggaagtgatctttatacttgctcgacagctgtgaaagttggtgctgcttattgacttaggtcagattgggtgagttgtgcag

Basic information

species Physcomitrella patens
transcript PP1S136_29V6.4
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100352894|gb|BY945503.1|BY945503
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTTCCCAGAAGCTTTCA-GTTGGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTT-CAAGTTGGTGTGTT
EST: gi|208346237|gb|DC905226.1|DC905226
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGNATCAG                         ATTTATGACATTTTCNAGCTTCTTCCC-AGAN-CTNCANGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|67718771|gb|BJ969030.1|BJ969030
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTT
EST: gi|208391822|gb|DC937998.1|DC937998
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATT-ATGACATTTTCCAGCTTCT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCT
EST: gi|100404170|gb|BY955290.1|BY955290
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGAT-CAAAGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|67726507|gb|BJ976766.1|BJ976766
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTTCAAGTTGGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGC-TTCAAGTTGGTGTGTT
EST: gi|100389111|gb|BY952315.1|BY952315
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTCCTTCCCCAGAAGCTTCAA-TTGGGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGG-TGTGTT
EST: gi|100402416|gb|BY954825.1|BY954825
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTTCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100410712|gb|BY992230.1|BY992230
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208365823|gb|DC951058.1|DC951058
EST:     GGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCCAGAAGCTTCAAGTTGGTGTGTT
genomic: GGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTT-CCCCAGAAGCTTCAAGTTGGTGTGTT
EST: gi|100375014|gb|BY949152.1|BY949152
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTNCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTTCA-GT-GGTGNTGT
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATT-CAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTT-CAAGTTGGTG-TGT
EST: gi|100370606|gb|BY948427.1|BY948427
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTTCCCAGAAGCTTCAAGTTGGNTGTGT-
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGG-TGTGTT
EST: gi|208370572|gb|DC936116.1|DC936116
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGNATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCTNCANGTTGGTGTGT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGT
EST: gi|100384758|gb|BY950748.1|BY950748
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTTCA-GGATCAG                         ATTTATGACATTTTC
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATT-CAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTC
EST: gi|100385372|gb|BY950964.1|BY950964
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|162164328|gb|FC340999.1|FC340999
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208373819|gb|DC936590.1|DC936590
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCT
EST: gi|100447847|gb|CJ972146.1|CJ972146
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCTNCANGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208388160|gb|DC933210.1|DC933210
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATNCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCT
EST: gi|208386845|gb|DC941563.1|DC941563
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGG-ATTCAAGNATCAG                         ATTTATGACATTTTCCAGCTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTT
EST: gi|208382954|gb|DC927704.1|DC927704
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100402371|gb|BY954802.1|BY954802
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAGGGATCAG                         ATTTATGACATTTTCCAGCTTCTTTCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100397827|gb|BY990421.1|BY990421
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTNCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATT-CAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100445896|gb|CJ970195.1|CJ970195
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTNCANGTTGGTGTGT-C
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|22491759|gb|BU051682.1|BU051682
EST:     TCTTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100402544|gb|BY954888.1|BY954888
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCA-GGAATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCTT
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGA-TCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTT
EST: gi|208355740|gb|DC910534.1|DC910534
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAA
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAA
EST: gi|67719313|gb|BJ969572.1|BJ969572
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|162162449|gb|FC339193.1|FC339193
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGC
EST: gi|100362773|gb|BY947521.1|BY947521
EST:     CGTGCTGGACGAAGCTGACGNAATGCTCTCGAGGGGATTTCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCNAGTTGGGTGTGT-
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATT-CAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGG-TGTGTT
EST: gi|208352225|gb|DC906314.1|DC906314
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAA
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAA
EST: gi|208363579|gb|DC939770.1|DC939770
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGAAT-CAAGGATCAG                         ATT-ATGACATTTTCNAGCTNCTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTC
EST: gi|100352674|gb|BY945390.1|BY945390
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208391403|gb|DC941825.1|DC941825
EST:     TCGTGCTGGACGAAGCTGACNAA-TGCTCTCGAGGGAAT-CAAGNATCAN                         ATT-ATGACATTT-CCAGCTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTT
EST: gi|100395334|gb|BY953685.1|BY953685
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTTCCCCAGA-GCTTCAAGGTGGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTT-CCCCAGAAGCTTCAAGTTGGTGTGTT
EST: gi|100446197|gb|CJ970496.1|CJ970496
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAN                         ANTTATGACATTTTCCAGCTTCTNCCC-ANAANCTNCAANT-GGTGTGT-C
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208371552|gb|DC936273.1|DC936273
EST:     TCGTGCTGGACGAAGCTGACGAA-TGCTCTCGAGGGGATNCAAGNATCAG                         ATTTATGACATTTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTC
EST: gi|100394678|gb|BY989878.1|BY989878
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGNATTCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGG-ATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208370689|gb|DC936839.1|DC936839
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCTTCANGTNGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100447473|gb|CJ971772.1|CJ971772
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATNCAAGGATCAG                         ATT-ATGACATTTTCCAGCTTCT-CCCCAGAAGCTNCAAGTTGGTGTG
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTG
EST: gi|67719815|gb|BJ970074.1|BJ970074
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTCCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208388732|gb|DC941531.1|DC941531
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCANGNATCAA                         ATTTATGACATTTTCCAGCTTCT-CCCCANAA-CTTCA
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCA
EST: gi|208375347|gb|DC940457.1|DC940457
EST:     TCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|67718006|gb|BJ968265.1|BJ968265
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100397563|gb|BY990289.1|BY990289
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100396932|gb|BY953900.1|BY953900
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGGATTCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTCCAAGTTGGTGTGTTC
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGG-ATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208360428|gb|DC930795.1|DC930795
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGAT-CAAGGATCAA                         ATTTATGACATTT-CCAGCTNCTTCCC-ANAA-CTTCANGTTGGT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGT
EST: gi|100409416|gb|BY992000.1|BY992000
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208379099|gb|DC911624.1|DC911624
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGAAT-CAAGGATCAA                         ATTTATGACATTTTCCAGCT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCT
EST: gi|100352544|gb|BY945325.1|BY945325
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCA-GGNATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTTCA-GTTTTGTGTG
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGG-ATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTT-CAAGTTG-GTGTG
EST: gi|100416817|gb|BY993103.1|BY993103
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208379703|gb|DC903758.1|DC903758
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTC
EST: gi|100402291|gb|BY991038.1|BY991038
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTTCTTCCC-AGAAGCTTCAAGTTGGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTT-CTTCCCCAGAAGCTTCAAGTTGGTGTGTT
EST: gi|100395059|gb|BY953586.1|BY953586
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCNAAGT-GGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTC-AAGTTGGTGTGTT
EST: gi|208350668|gb|DC913954.1|DC913954
EST:     TCGTGCTGGACGAANCTGACGAAATGCTCTCGAGGGGAT-CAAGGATCAA                         ATT-ATGACATTT-CCANCTTCTTCCC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACGATATGTTGCGTAGGAACGCACTTCGTGCTGATGCAATCAAGTGCTTCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaaggatttttcaagttcagtagaacttgcatgatcttattgttcctggatgataaggaagtgatctttatacttgctcgacagctgtgaaagttggtgctgcttattgacttaggtcagattgggtgagttgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA