Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGTACAAGATGGAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgatttttaagtatatttctcttttttcgctgatcctttgataatggacttaaaacttttcgcttctgacttgaaaagtgctggttattgtgtgcg...

Basic information

species Physcomitrella patens
transcript PP1S136_220V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100429205|gb|BY977993.1|BY977993
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|18356860|gb|BJ188919.1|BJ188919
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100352388|gb|BY983183.1|BY983183
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208393325|gb|DC903999.1|DC903999
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208351521|gb|DC909979.1|DC909979
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|162208445|gb|FC384408.1|FC384408
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|162168874|gb|FC345348.1|FC345348
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|67507874|gb|BJ940750.1|BJ940750
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|162271254|gb|FC447191.1|FC447191
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|162273379|gb|FC449828.1|FC449828
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|22492259|gb|BU052182.1|BU052182
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208387752|gb|DC941321.1|DC941321
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100399380|gb|BY954341.1|BY954341
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100375740|gb|BY968173.1|BY968173
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|18356553|gb|BJ188612.1|BJ188612
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100402534|gb|BY954883.1|BY954883
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100440241|gb|BY962134.1|BY962134
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100411094|gb|BY956321.1|BY956321
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGGAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|18352296|gb|BJ184350.1|BJ184350
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|162199735|gb|FC375974.1|FC375974
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|162241862|gb|FC418117.1|FC418117
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACTATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100396887|gb|BY953877.1|BY953877
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208365753|gb|DC935808.1|DC935808
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100437696|gb|BY979783.1|BY979783
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208344530|gb|DC905091.1|DC905091
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208390066|gb|DC938121.1|DC938121
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208385275|gb|DC915075.1|DC915075
EST:     GAGCTGTACCTGCTTACCTATTGGATCGNGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100380682|gb|BY986734.1|BY986734
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208375393|gb|DC940475.1|DC940475
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208391122|gb|DC942062.1|DC942062
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100392655|gb|BY971818.1|BY971818
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208373470|gb|DC941067.1|DC941067
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCANAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|162184429|gb|FC359175.1|FC359175
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|162234658|gb|FC410404.1|FC410404
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208369176|gb|DC936033.1|DC936033
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100361629|gb|BY966146.1|BY966146
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100447434|gb|CJ971733.1|CJ971733
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|18363960|gb|BJ196033.1|BJ196033
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100366881|gb|BY948257.1|BY948257
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|162274757|gb|FC450511.1|FC450511
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|162155077|gb|FC330871.1|FC330871
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100415702|gb|BY992962.1|BY992962
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|162212960|gb|FC389176.1|FC389176
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100425001|gb|BY976922.1|BY976922
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|100392894|gb|BY989661.1|BY989661
EST:     GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: GAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
EST: gi|208365968|gb|DC951169.1|DC951169
EST:     TGGATCGTGAACAAACTGCCCGTGNTAAG                         GTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG
genomic: TGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 29 (downstream exon)
Score: 25

GCATTCTGAACGAACCAATCGCCACAAAGCTGATGACCAAGTACAAGATGGAGCTGTACCTGCTTACCTATTGGATCGTGAACAAACTGCCCGTGCTAAGgtattgattt ... gaattttcagGTTCTCAGCAACACCATCAAGCAGAAACGTAAGGAGAAGGCTGGTAAATGGGAGGTGCCTCTTCCTAAG




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