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GCGTTGGACAAGATTCGGTTCCTTTCTCTCACCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgattaatactttagtcctgtttatcttaggttggaattgtcacacctctcttcaatttacctgttagcaatcagttgactcgaatgtttctgaatagtaacgccggctggactatttgttctacag
species | Physcomitrella patens |
transcript | PP1S126_38V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACAAGGAGAAGAAGGTGTTGACTATEST: gi|18346023|gb|BJ178066.1|BJ178066
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGACAAGGAGAAGAAGGTGTTGACTAT
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACEST: gi|18354827|gb|BJ186886.1|BJ186886
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGAC
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACAAGGAGAAGAAGGTGTTGACTATTCGGGACCGTGGTATCEST: gi|18357801|gb|BJ189860.1|BJ189860
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGACAAGGAGAAGAAGGTGTTGACTATTCGGGACCGTGGTATC
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACAEST: gi|18329083|gb|BJ161089.1|BJ161089
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGACA
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACAAGGAGAAGAAGGTGTTGACTEST: gi|18331239|gb|BJ163248.1|BJ163248
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGACAAGGAGAAGAAGGTGTTGACT
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACAAGGAGAAGAAGGTGTTGACTEST: gi|18344948|gb|BJ176989.1|BJ176989
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGACAAGGAGAAGAAGGTGTTGACT
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACAEST: gi|18375456|gb|BJ207034.1|BJ207034
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGACA
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACEST: gi|100406123|gb|BY991551.1|BY991551
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGAC
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCANAACTGGATATCCAC ATTAAACTGGACAAGGAGAAGAAGGTGTTGACTATTCGGGACCGTGGTATCEST: gi|18360762|gb|BJ192825.1|BJ192825
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGACAAGGAGAAGAAGGTGTTGACTATTCGGGACCGTGGTATC
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACAAGGAGAAGAAGGTGTTGACTAEST: gi|18364379|gb|BJ196452.1|BJ196452
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGACAAGGAGAAGAAGGTGTTGACTA
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACEST: gi|67719606|gb|BJ969865.1|BJ969865
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGAC
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACAAGGAGAAGAAGGTGTTGACTATTCGGGACCGTGGTATCEST: gi|18343482|gb|BJ175520.1|BJ175520
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGACAAGGAGAAGAAGGTGTTGACTATTCGGGACCGTGGTATC
EST: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCAC ATTAAACTGGACA
genomic: CCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgatt ... tgttctacagATTAAACTGGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTTGGACAAGATTCGGTTCCTTTCTCTCACCGATTCTTCAGTTCTTGGCGAAGGAGATGACGCAAAACTGGATATCCACgtaagcgattaatactttagtcctgtttatcttaggttggaattgtcacacctctcttcaatttacctgttagcaatcagttgactcgaatgtttctgaatagtaacgccggctggactatttgttctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG