1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGCTTTCGAGAAACAGCAGAAAGAGATATCTCGAACAGAAGATTTGATTCAAAGACTAAGTGGTGGAGCTAATTCCGGTCGAGCTTCAGCAGCTGAGAAGgtagtccctcaaacttcatggtaaatattagcagatttcgttcatcaaactgtttgtgaacgtttgccgaatattctcttgccaggtatgtaagaaatga...
species | Physcomitrella patens |
transcript | PP1S125_77V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAGACTAAGTGGTGGAGCTAATTCCGGTCGAGCTTCAGCAGCTGAGAAG CAACTTGAGAAAATGCAAGAAGTTGGAAACATAGTTGAAAAGCCATTTGAAEST: gi|100410339|gb|BY992057.1|BY992057
genomic: AAAGACTAAGTGGTGGAGCTAATTCCGGTCGAGCTTCAGCAGCTGAGAAGgtagtccctc ... attgtttcagCAACTTGAGAAAATGCAAGAAGTTGGAAACATAGTTGAAAAGCCATTTGAA
EST: AAAGACTAAGTGGTGGAGCTAATTCCGGTCGAGCTTCAGCAGCTGAGAAG CAACTTGAGAAAATGCAAGAAGTTGGAAACATAGTTGAAAAGCCATTTGAAEST: gi|100410249|gb|BY974483.1|BY974483
genomic: AAAGACTAAGTGGTGGAGCTAATTCCGGTCGAGCTTCAGCAGCTGAGAAGgtagtccctc ... attgtttcagCAACTTGAGAAAATGCAAGAAGTTGGAAACATAGTTGAAAAGCCATTTGAA
EST: AAAGACTAAGTGGTGGAGCTAATTCCGGTCGAGCTTCAGCAGCTGAGAAG CAACTTGAGAAAATGCAAGAAGTTGGAAACATAGTTGAAAAGCCATTTGAAEST: gi|162157390|gb|FC333180.1|FC333180
genomic: AAAGACTAAGTGGTGGAGCTAATTCCGGTCGAGCTTCAGCAGCTGAGAAGgtagtccctc ... attgtttcagCAACTTGAGAAAATGCAAGAAGTTGGAAACATAGTTGAAAAGCCATTTGAA
EST: AAAGACTAAGTGGTGGAGCTAATTCCGGTCGAGCTTCAGCAGCTGAGAAG CAACTTGAGAAAATGCAAGAAGTTGGAAACATAGTTGAAAAGCCATTTGAA
genomic: AAAGACTAAGTGGTGGAGCTAATTCCGGTCGAGCTTCAGCAGCTGAGAAGgtagtccctc ... attgtttcagCAACTTGAGAAAATGCAAGAAGTTGGAAACATAGTTGAAAAGCCATTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTTTCGAGAAACAGCAGAAAGAGATATCTCGAACAGAAGATTTGATTCAAAGACTAAGTGGTGGAGCTAATTCCGGTCGAGCTTCAGCAGCTGAGAAGgtagtccctcaaacttcatggtaaatattagcagatttcgttcatcaaactgtttgtgaacgtttgccgaatattctcttgccaggtatgtaagaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA