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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCATCTCATCACAAATGAAGACCTCTCAAAATTTGTGGACACCTCGGATGAATGGATTTCCGTGCGAACAGGAATTCGCAATCGTCGCGTACTCGGAGgcgagacatctttcttataaatactttgctgtgactccatttttctttgcactcctctacgatattatacccaggttatcacatttatttacgatttaaa...

Basic information

species Physcomitrella patens
transcript PP1S11_305V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208350888|gb|DC909935.1|DC909935
EST:     TGAATGGATTTCCGTGCGAACAGGAATTCGCAATCGTCGCGTACTCGGAG                         AGGAGGAGTCCGTCACATCATTATCCGTGGAAGCTTCAAGGAAGGCCCTCG
genomic: TGAATGGATTTCCGTGCGAACAGGAATTCGCAATCGTCGCGTACTCGGAGgcgagacatc ... taatgtgcagAGGAGGAGTCCGTCACATCATTATCCGTGGAAGCTTCAAGGAAGGCCCTCG
EST: gi|162226063|gb|FC401029.1|FC401029
EST:     TGAATGGATTTCCGTGCGAACAGGAATTCGCAATCGTCGCGTACTCGGAG                         AGGAGGAGTCCGTCACATCATTATCCGTGGAAGCTTCAAGGAAGGCCCTCG
genomic: TGAATGGATTTCCGTGCGAACAGGAATTCGCAATCGTCGCGTACTCGGAGgcgagacatc ... taatgtgcagAGGAGGAGTCCGTCACATCATTATCCGTGGAAGCTTCAAGGAAGGCCCTCG
EST: gi|100403883|gb|BY955149.1|BY955149
EST:     TGAATGGATTTCCGTGCGAACAGGAATTCGCAATCGTCGCGTACTCGGAG                         AGGAGGAGTCCGTCACATCATTATCCGTGGAAGCTTCAAGGGAAG-CCCTC
genomic: TGAATGGATTTCCGTGCGAACAGGAATTCGCAATCGTCGCGTACTCGGAGgcgagacatc ... taatgtgcagAGGAGGAGTCCGTCACATCATTATCCGTGGAAGCTTCAAGG-AAGGCCCTC
EST: gi|100393437|gb|BY953399.1|BY953399
EST:     TGAATGGATTTCCGTGCGAACAGGAATTCGCAATCGTCGCGTACTCGGAG                         AGGAGGAGTCCGTCACATCATTATCCGTGGAAGCTTCAAG-AANGGCCCTC
genomic: TGAATGGATTTCCGTGCGAACAGGAATTCGCAATCGTCGCGTACTCGGAGgcgagacatc ... taatgtgcagAGGAGGAGTCCGTCACATCATTATCCGTGGAAGCTTCAAGGAA-GGCCCTC