1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTTTGTGAAGGACCCATTACAGGTCGTGCAGCAGACGTCCTGGCTGCTGCCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAGgtcagcacttgcgtgtacttctcgggtttgcagtacttggaaagatctatcgagtgctgaatacttcttgagatccgtgattcgtttcttgattaaattc...
species | Physcomitrella patens |
transcript | PP1S119_137V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAG AACAAAGACGTAACGGAAGCCATTCAGAAGGTGGCTGCTGCATACGACTGTEST: gi|100384797|gb|BY950787.1|BY950787
genomic: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAGgtcagcactt ... tgttgtacagAACAAAGACGTAACGGAAGCCATTCAGAAGGTGGCTGCTGCATACGACTGT
EST: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAG AACAAAGACGTAAACGGAAGCCATTCAGAAGGTGGCTGCTGCATACGEST: gi|162183958|gb|FC359328.1|FC359328
genomic: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAGgtcagcactt ... tgttgtacagAACAAAGACGTAA-CGGAAGCCATTCAGAAGGTGGCTGCTGCATACG
EST: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAG AACAAAGACGTAACGGAAGCCATTCAGAAGGTGGCTGCTGCATACGACTGTEST: gi|67719527|gb|BJ969786.1|BJ969786
genomic: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAGgtcagcactt ... tgttgtacagAACAAAGACGTAACGGAAGCCATTCAGAAGGTGGCTGCTGCATACGACTGT
EST: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAG AACAAAGACGTAACGGAAGCCATTCAGAAGGTGGCTGCTGCATACGACTGTEST: gi|162161202|gb|FC337265.1|FC337265
genomic: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAGgtcagcactt ... tgttgtacagAACAAAGACGTAACGGAAGCCATTCAGAAGGTGGCTGCTGCATACGACTGT
EST: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAG AACAAAGACGTAACGGAAGCCATTCAGAAAGTGGCTGCTGCATACGACTGTEST: gi|100397823|gb|BY990419.1|BY990419
genomic: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAGgtcagcactt ... tgttgtacagAACAAAGACGTAACGGAAGCCATTCAGAAGGTGGCTGCTGCATACGACTGT
EST: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAG AACAAAGACGTAACGGAAGCCATTCAGAAGGTGGCTGCTGCATACGACTGT
genomic: CCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAGgtcagcactt ... tgttgtacagAACAAAGACGTAACGGAAGCCATTCAGAAGGTGGCTGCTGCATACGACTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTGTGAAGGACCCATTACAGGTCGTGCAGCAGACGTCCTGGCTGCTGCCCATACAGCTGCAGAGGTTGCACTTCGTCTAGTGAGGCCTGGAAAGAAGgtcagcacttgcgtgtacttctcgggtttgcagtacttggaaagatctatcgagtgctgaatacttcttgagatccgtgattcgtttcttgattaaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG