Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCCAAGTGACTATTGCAACTGCCATTGTATTCTGCCATCGGTTTTTCCATCGACAATCACATGCAAAAAATGACAGACTTgtgagtatctgcaagccctggattcctccttatttaggtccagggaattgtgatcctaggcatgtactacagctttgcggatttgtgaacaatttgtaacttttatttgttcttgtgctcatgagtatgtgtatttttacag

Basic information

species Physcomitrella patens
transcript PP1S119_132V6.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S119_132V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 11
TCCCCAAGTGACTATTGCAACTGCCATTGTATTCTGCCATCGGTTTTTCCATCGACAATCACATGCAAAAAATGACAGACTTgtgagtat-ctgcaagccctggattcctccttatttaggtccagggaattgtgatcctaggcatgtactacagctttgcggatttgtgaacaatttgtaacttttatttgttcttgtgctcatgagtatgtgtatttttacag
 || |||||||| ||||| ||||| || || ||||| ||||||||||| | ||| ||||| ||||| |||||||||||||  || ||| | ||  | ||  |     |||  | |  |  ||      ||   ||||  ||   | ||| |    ||||    |    | ||  | |||  ||  ||                                      
GCCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTTTTTCTTCGTCAATCTCATGCGAAAAATGACAGACGGgtaagttttctagatgcttttttaaccttttgacctctgtgtttttaac-atgattgtaaaga-gtattttt-ctttataaac--ataaatcacttg-gacagttg-------------------------------------

upper sequence: PP1S119_132V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AC233979.1_FGT009 (Zea mays), 5'ss of exon 2
TCCCCAAGTGACTATTGCAACTGCCATTGTATTCTGCCATCGGTTTTTCCATCGACAATCACATGCAAAAAATGACAGACTTgtgagtatctgcaagccctggattcctccttatttaggtccagggaattgtgatcctaggcatgtactacagctttgcggatt--tgtgaacaatttgtaacttttatttgttcttgtgctcatgagtatgtgtatttttacag
 || |||||||| ||||| ||||| || || ||||| |||||||| || | ||| ||||| ||||| |||||||||||||  || ||| | |  |    ||    |  |     |||    |   | | |||| | | |     |  |   ||  |||    ||   | | ||  | ||| |   |||                                      
ACCTCAAGTGACAATTGCTACTGCTATAGTGTTCTGTCATCGGTTCTTTCTTCGTCAATCGCATGCCAAAAATGACAGACGGgttagt-tttatagatgct----tttttaaccttttaacctctgcatttgtaa-catgattgtaaagagcaattttctttatacatataaatcacttgaacacttt--------------------------------------

upper sequence: PP1S119_132V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G377311_T03 (Zea mays), 5'ss of exon 2
------------------TCCCCAAGTGACTATTGCAACTGCCATTGTATTCTGCCATCGGTTTTTCCATCGACAATCACATGCAAAAAATGACAGACTTgtgagtatctgcaagccctggattcctccttatttaggtccagggaattgtgatcctaggcatgtactacagctttgcggatttgtgaacaatttgtaacttttatttgttcttgtgctcatgagtatgtgtatttttacag
                   ||||||||||| ||||| || || || |||||||| ||||| |||| || ||| ||||| | |||||||||||| ||||  || ||| |    ||  |   ||||    ||  ||| |||           || |      ||| | ||  |   ||    | || | |     |||  |     | ||                                  
TACCTGTGCTGTTTTTAGGCCCCAAGTGACGATTGCCACAGCAATGGTATTCTGTCATCGTTTTTACCTTCGTCAATCCCTTGCAAAAAATGATAGACGAgtaagtct----aattcgatgattgtctctagttttggtt-----gtccatggttgccaacatttcctttaagctttataagttataactgcattgccatagaaacttt---------------------------------

upper sequence: PP1S119_132V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G377311_T01 (Zea mays), 5'ss of exon 3
TCCCCAAGTGACTATTGCAACTGCCATTGTATTCTGCCATCGGTTTTTCCATCGACAATCACATGCAAAAAATGACAGACTTgtgagtatctgcaagccctggattcctccttatttaggtccagggaattgtgatcctaggcatgtactacagctttgcggatttgtgaacaatttgtaacttttatttgttcttgtgctcatgagtatgtgtatttttacag
 ||||||||||| ||||| || || || |||||||| ||||| |||| || ||| ||||| | |||||||||||| ||||  || ||| |    ||  |   ||||    ||  ||| |||           || |      ||| | ||  |   ||    | || | |     |||  |     | ||                                  
GCCCCAAGTGACGATTGCCACAGCAATGGTATTCTGTCATCGTTTTTACCTTCGTCAATCCCTTGCAAAAAATGATAGACGAgtaagtct----aattcgatgattgtctctagttttggtt-----gtccatggttgccaacatttcctttaagctttataagttataactgcattgccatagaaacttt---------------------------------