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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGACCACGAAGAAGATTGTGCTTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagttctcgtcctttcgagggctcgtctgtttctgacgaggattaccttggaagtcttggtcatcagctatctcatatttaatgagttattttc...

Basic information

species Physcomitrella patens
transcript PP1S115_63V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S115_63V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
GCTAAGACCACGAAGAAGATTGTGCTTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagttctcgtcctttcgagggctc---gtctgtttctgacgaggattaccttggaagtc-ttggtcatcagctatctcatatttaatgagt-----tattttc-----------------
||||||||||| ||||||||||| || ||||||||||||||||  |||||||| ||  | |||||  |||| ||||| ||||  |  |   |    | | || |    ||   | | || |  |   |   | |  | |  || ||      |||| |  |  |  |   ||      | |||                  
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag

upper sequence: PP1S115_63V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 3
GCTAAGACCACGAAGAAGATTGTGCTTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagttctcgtcctttcgagggctcgtctgtttctgacgaggat-taccttggaagtcttggtcatcagctatctcatatttaatgagttattttc
||||||||||| ||||||||||| || ||||||||||||||||  |||||||| ||  | |||||  |||| ||||| ||||  |  |   |    | | || |     ||   ||    | || | |  ||    |  ||||      || ||| || ||   || |        
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaa-gtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtct-atgtt-gttgtgcag-----

upper sequence: PP1S115_63V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA15G05670.1 (Glycine max), 5'ss of exon 3
GCTAAGACCACGAAGAAGATTGTGCTTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagttctcgtcctttcgagggctcgtctgtttctgacgaggattaccttggaagtcttggtcatcagctatctcatatttaatgagttattttc
||||| ||||| ||||||||||| || ||||||||||||||||  |||||||| ||  | |||||  |||| ||||| ||||  |      |  |  || |  |  |  ||| |    |  |  |  ||      | || ||      |||| |  |                  
GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggaaagcaatg-gatgcttttttggttccatgtggtgtgtggctaatggttgttagttcctgtctatgttgtgcag--------------

upper sequence: PP1S115_63V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 4
GCTAAGACCACGAAGAAGATTGTGCTTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagttctcgtcctttcgagggctcgtctgtttctgacgaggattaccttggaagtcttggtcatcagctatctcatatttaatgagttattttc----------
|| || ||||| |||||||| || || |||||||||||||||| |||||| |||||  | || ||||| |||||||| | ||   ||||   |||   |  |||  | |||||     |     | |||    | || | || | || |||   | | |||    |  | ||             
GCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtca-ta---tctcaaactta-aatcgcttatttgttttcttgg-----tccctcctcattcctagtgaacacctaggacttgtttggcaatcttttcaaaaaccattct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162241724|gb|FC417251.1|FC417251
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|15727947|gb|BI740543.1|BI740543
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162249414|gb|FC424032.1|FC424032
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|7583820|gb|AW699723.1|AW699723
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162229077|gb|FC404254.1|FC404254
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162270318|gb|FC447018.1|FC447018
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|15261348|gb|BI436658.1|BI436658
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162222248|gb|FC397684.1|FC397684
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162241723|gb|FC417250.1|FC417250
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162247484|gb|FC425050.1|FC425050
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|15261810|gb|BI437120.1|BI437120
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|15261434|gb|BI436737.1|BI436737
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162227849|gb|FC403657.1|FC403657
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|15261357|gb|BI436667.1|BI436667
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|7046977|gb|AW476871.1|AW476871
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|6167413|gb|AW145677.1|AW145677
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162200253|gb|FC376606.1|FC376606
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162239110|gb|FC416236.1|FC416236
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|7286498|gb|AW598985.1|AW598985
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCTAGCATTTCGAGATTGGAGGAGACAAGAATGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|7287187|gb|AW599674.1|AW599674
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|18339123|gb|BJ171149.1|BJ171149
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162227850|gb|FC403658.1|FC403658
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|18331764|gb|BJ163775.1|BJ163775
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|15327541|gb|BI488295.1|BI488295
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTC
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTC
EST: gi|15261738|gb|BI437048.1|BI437048
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|19788458|gb|BQ040770.1|BQ040770
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|15727710|gb|BI740425.1|BI740425
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|7583968|gb|AW699868.1|AW699868
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162267270|gb|FC442058.1|FC442058
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162243996|gb|FC424314.1|FC424314
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|19777295|gb|BQ039166.1|BQ039166
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|7148012|gb|AW509934.1|AW509934
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|19788138|gb|BQ040727.1|BQ040727
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|19789993|gb|BQ041632.1|BQ041632
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162202455|gb|FC380022.1|FC380022
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162222247|gb|FC397683.1|FC397683
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|15727481|gb|BI740313.1|BI740313
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|15261531|gb|BI436841.1|BI436841
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|7148002|gb|AW509924.1|AW509924
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162232436|gb|FC408337.1|FC408337
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|15261278|gb|BI436588.1|BI436588
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162202454|gb|FC380021.1|FC380021
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|15261398|gb|BI436708.1|BI436708
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162215486|gb|FC390551.1|FC390551
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162239796|gb|FC417195.1|FC417195
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162237952|gb|FC412540.1|FC412540
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTATTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|67697893|gb|BJ958126.1|BJ958126
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162231290|gb|FC406531.1|FC406531
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162270317|gb|FC447017.1|FC447017
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTATTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|162264250|gb|FC441352.1|FC441352
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
EST: gi|67574475|gb|BJ947299.1|BJ947299
EST:     TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG
genomic: TTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 88

GCTAAGACCACGAAGAAGATTGTGCTTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagt ... aattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAGCTCTTCTAGGCATCACGTCAGGTCCAACTAGAGTCTGGAGTGTTGATAA




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