1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCTAGTGTGAAGGACATTTGCAAGGATGGTGGCATTATTAAGAAAATTGTTACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCGgtaagtacatcactcgattcagagtttagtcgtttagcgccgatggtaatgttcaatacaaatgcttagtcagtttctctagtaaattattcggttcttg...
species | Physcomitrella patens |
transcript | PP1S109_70V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCG TGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCCEST: gi|162221593|gb|FC397610.1|FC397610
genomic: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCGgtaagtacat ... aaatttgcagTGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCC
EST: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCG TGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCCEST: gi|162160213|gb|FC337110.1|FC337110
genomic: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCGgtaagtacat ... aaatttgcagTGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCC
EST: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCG TGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCCEST: gi|100447939|gb|CJ972238.1|CJ972238
genomic: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCGgtaagtacat ... aaatttgcagTGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCC
EST: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCG TGAAGTACGAAGTGAGACTCCNGCGACATCAGACAGTAGTGGCGAAGTCCCEST: gi|67573557|gb|BJ946381.1|BJ946381
genomic: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCGgtaagtacat ... aaatttgcagTGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCC
EST: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCG TGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCCEST: gi|162173905|gb|FC349705.1|FC349705
genomic: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCGgtaagtacat ... aaatttgcagTGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCC
EST: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCG TGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCCEST: gi|162193217|gb|FC371524.1|FC371524
genomic: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCGgtaagtacat ... aaatttgcagTGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCC
EST: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCG TGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCCEST: gi|100362283|gb|BY947282.1|BY947282
genomic: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCGgtaagtacat ... aaatttgcagTGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCC
EST: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCG TGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCCEST: gi|162172470|gb|FC349139.1|FC349139
genomic: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCGgtaagtacat ... aaatttgcagTGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCC
EST: TACAGAAGGCAAAAAGTGGGAGAATCCTAAGGATCTTGATGAAGTTCTCG TGAAGTACGAAGTGAGACTCCAGCGACATCACACAGTAGTGGCGAAGTCCC
genomic: TACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCGgtaagtacat ... aaatttgcagTGAAGTACGAAGTGAGACTCCAGCGACATCAGACAGTAGTGGCGAAGTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAGTGTGAAGGACATTTGCAAGGATGGTGGCATTATTAAGAAAATTGTTACGGAAGGCAAAAAGTGGGAGAATCCAAAGGATCTTGATGAAGTTCTCGgtaagtacatcactcgattcagagtttagtcgtttagcgccgatggtaatgttcaatacaaatgcttagtcagtttctctagtaaattattcggttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatacaaa