1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGAGGAGTTTGTGATGACCAAAGATGAGTTTTCTGGTGCTGACATTAAAGCTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCGCATGAAGgtgagactgttcgtattttgcatttcatgaatatgggcttcttgactagttgaaatcaggtgccagttatgcagtactttattattgcaccttcaaggttttagttgataatgtgattttgattttttcagcacggttgtgcaattaaatggatcttattggatgttggtcctgcag
species | Physcomitrella patens |
transcript | PP1S109_234V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCACATGAAG GTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAGEST: gi|67694035|gb|BJ954268.1|BJ954268
genomic: CTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCGCATGAAGgtgagactgt ... ggtcctgcagGTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAG
EST: CTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCGCATGAAG GTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAGEST: gi|162186727|gb|FC362763.1|FC362763
genomic: CTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCGCATGAAGgtgagactgt ... ggtcctgcagGTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAG
EST: CTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCGCATGAAG GTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAGEST: gi|37849561|gb|BJ607569.1|BJ607569
genomic: CTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCGCATGAAGgtgagactgt ... ggtcctgcagGTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAG
EST: CTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCACATGAAG GTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAGEST: gi|37830407|gb|BJ588419.1|BJ588419
genomic: CTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCGCATGAAGgtgagactgt ... ggtcctgcagGTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAG
EST: CTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCGCATGAAG GTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAG
genomic: CTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCGCATGAAGgtgagactgt ... ggtcctgcagGTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGAGTTTGTGATGACCAAAGATGAGTTTTCTGGTGCTGACATTAAAGCTATCTGTACGGAAGCTGGTCTTCTTGCATTGCGTGAGCGCCGCATGAAGgtgagactgttcgtattttgcatttcatgaatatgggcttcttgactagttgaaatcaggtgccagttatgcagtactttattattgcaccttcaaggttttagttgataatgtgattttgattttttcagcacggttgtgcaattaaatggatcttattggatgttggtcctgcag
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