1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCATTGGCATTTGGGTACCCTGGAGAGCAGAAGCACACAGGTCTCGAATTCATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctccattgtctttatttttattctctttgtcttttgctcgaattactgaagctttcttttaagcttagcaccaacctttgtcacttcagtttag...
species | Physcomitrella patens |
transcript | PP1S101_1V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGATEST: gi|162180334|gb|FC355339.1|FC355339
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGATEST: gi|162181609|gb|FC357911.1|FC357911
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGATEST: gi|37836107|gb|BJ594115.1|BJ594115
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGATEST: gi|162176368|gb|FC353553.1|FC353553
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGATEST: gi|37845500|gb|BJ603508.1|BJ603508
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGATEST: gi|162150913|gb|FC327393.1|FC327393
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGATEST: gi|162150914|gb|FC327394.1|FC327394
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGATEST: gi|162181610|gb|FC357912.1|FC357912
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGATEST: gi|162257862|gb|FC434060.1|FC434060
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGATEST: gi|162255493|gb|FC431283.1|FC431283
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGATEST: gi|162181177|gb|FC357310.1|FC357310
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
EST: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAG GAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
genomic: CATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctcc ... gctcatgaagGAAGCGAGAAAGGCAGCACAGAAAGGAATGGATGTGCAGAGGGTGGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATTGGCATTTGGGTACCCTGGAGAGCAGAAGCACACAGGTCTCGAATTCATCATCCGCAGTGGCCACCAATCACTTCAAAGTCTTGAATGCTGTTCAGgtattgctccattgtctttatttttattctctttgtcttttgctcgaattactgaagctttcttttaagcttagcaccaacctttgtcacttcagtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT