1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAAACAGCGCTTATGTTGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCTgtgcgttctaaacccttatattgctctgttgccctttaatcactgcattttattctagacagtgtttgttactgcttctgcaattgatgattccttgaacacgctgtattctgaggcag
species | Physcomitrella patens |
transcript | PP1S101_185V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCGCGACAAGTACAGCATTGCTGCT GTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCAAGCATEST: gi|208375549|gb|DC945108.1|DC945108
genomic: GCGCGACAAGTACAGCATTGCTGCTgtgcgttcta ... tctgaggcagGTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCAAGCAT
EST: TTATGTTGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCT GTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCAAGCATEST: gi|208382616|gb|DC919798.1|DC919798
genomic: TTATGTTGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCTgtgcgttcta ... tctgaggcagGTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCAAGCAT
EST: TTATGTTGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCT GTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCAAGCATEST: gi|37832046|gb|BJ590058.1|BJ590058
genomic: TTATGTTGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCTgtgcgttcta ... tctgaggcagGTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCAAGCAT
EST: TTATGTTGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCT GTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCGAGCATEST: gi|208360731|gb|DC946455.1|DC946455
genomic: TTATGTTGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCTgtgcgttcta ... tctgaggcagGTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCAAGCAT
EST: TTATGTNGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCT GTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCAAGCATEST: gi|162162823|gb|FC338085.1|FC338085
genomic: TTATGTTGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCTgtgcgttcta ... tctgaggcagGTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCAAGCAT
EST: TTATGTTGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCT GTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCAAGCAT
genomic: TTATGTTGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCTgtgcgttcta ... tctgaggcagGTCACAAACGATATCTTCACTGAGGAGGACGGAGAATTTTTAATCAAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAACAGCGCTTATGTTGGCGCTGTGCGAAACCTTGCGCGACAAGTACAGCATTGCTGCTgtgcgttctaaacccttatattgctctgttgccctttaatcactgcattttattctagacagtgtttgttactgcttctgcaattgatgattccttgaacacgctgtattctgaggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT