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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' |
CGAAATCAACGCAAGGAGACCTGACAAATTTAATATTTTCGAAGGCATTCACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttaccggtttggttgattacaatggaatgcaatcgtatgatgatcagattctatcggtgtcgaaagagccacacacacaagttgtttcgttggttccgtttcttgagcttatgtattgtatgcatcatccagcaagctctttacaagtcttggacttttctgttcgcag
species | Physcomitrella patens |
transcript | PP1S8_288V6.1 |
intron # | 32 |
splice site | 5' |
intron type | U2 |
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162175272|gb|FC351470.1|FC351470
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162189371|gb|FC366529.1|FC366529
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCCTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162186820|gb|FC363064.1|FC363064
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|18336099|gb|BJ168121.1|BJ168121
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162189370|gb|FC366528.1|FC366528
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCCTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162191835|gb|FC367984.1|FC367984
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162208803|gb|FC384939.1|FC384939
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162181320|gb|FC358415.1|FC358415
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|37849039|gb|BJ607047.1|BJ607047
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|37849985|gb|BJ607993.1|BJ607993
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162197899|gb|FC373953.1|FC373953
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162259196|gb|FC435216.1|FC435216
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162153021|gb|FC330051.1|FC330051
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162256238|gb|FC432294.1|FC432294
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTTTCATTGAAGAGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|37853493|gb|BJ611501.1|BJ611501
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162245992|gb|FC421881.1|FC421881
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162186821|gb|FC363065.1|FC363065
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCEST: gi|162272382|gb|FC449034.1|FC449034
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCC
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162162455|gb|FC338367.1|FC338367
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162272381|gb|FC449033.1|FC449033
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|37850518|gb|BJ608526.1|BJ608526
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTTAAEST: gi|162155066|gb|FC330860.1|FC330860
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGC-TTAA
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162166639|gb|FC343531.1|FC343531
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162205304|gb|FC380986.1|FC380986
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAATEST: gi|162256676|gb|FC433194.1|FC433194
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
EST: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAG TTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
genomic: ACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttac ... ctgttcgcagTTTGTGATCGTGCAGTTTTTGAACAAATTTGCCCAAACAACGAAGCTTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAAATCAACGCAAGGAGACCTGACAAATTTAATATTTTCGAAGGCATTCACAAGAATTATCTCTTCCTTGGCATTATTCTCATTGAAGTGATTCTCCAGgtgagtttaccggtttggttgattacaatggaatgcaatcgtatgatgatcagattctatcggtgtcgaaagagccacacacacaagttgtttcgttggttccgtttcttgagcttatgtattgtatgcatcatccagcaagctctttacaagtcttggacttttctgttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG