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AAAAAAGATTCATACGGTGCTTGGGAATACTATCTGGGTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAGgtatcttccccatctttggctgtaaattttatttatttgaattgccggaagttattgctttttcatatcttggtatggcacagcgagtcaagggtgtatg...
species | Physcomitrella patens |
transcript | PP1S104_2V6.1 |
intron # | 30 |
splice site | 5' |
intron type | U2 |
EST: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAG GGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATATEST: gi|162276114|gb|FC452806.1|FC452806
genomic: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAGgtatcttccc ... cttgatgcagGGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATAT
EST: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAG GGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATATEST: gi|162167819|gb|FC344549.1|FC344549
genomic: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAGgtatcttccc ... cttgatgcagGGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATAT
EST: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAG GGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATATEST: gi|162276115|gb|FC452807.1|FC452807
genomic: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAGgtatcttccc ... cttgatgcagGGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATAT
EST: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAG GGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATATEST: gi|15319953|gb|BI487282.1|BI487282
genomic: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAGgtatcttccc ... cttgatgcagGGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATAT
EST: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAG GGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATATEST: gi|37849465|gb|BJ607473.1|BJ607473
genomic: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAGgtatcttccc ... cttgatgcagGGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATAT
EST: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAG GGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATAT
genomic: GTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAGgtatcttccc ... cttgatgcagGGTCGTCACAGCTTTGAGAAGCCTGTGAAAATATATAATTGAGAAGTATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAAGATTCATACGGTGCTTGGGAATACTATCTGGGTTTGGAGCACATTGATTCAGCTCCTAAGCGAGCCCATCAAACTAACCAGgtatcttccccatctttggctgtaaattttatttatttgaattgccggaagttattgctttttcatatcttggtatggcacagcgagtcaagggtgtatg
- - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC