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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGATGGCTTCCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAGgtacgattactctacctgctgaaacgcctacgacgatggcctaatcgatcaagtagaaggttttgtttagcgagcaatgcggacatcagttccaggtttt...

Basic information

species Physcomitrella patens
transcript PP1S9_356V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100362407|gb|BY947341.1|BY947341
EST:     CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAG                         ATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
genomic: CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAGgtacgattac ... gtatttgcagATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
EST: gi|100426953|gb|BY977447.1|BY977447
EST:     CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAG                         ATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
genomic: CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAGgtacgattac ... gtatttgcagATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
EST: gi|162194715|gb|FC371562.1|FC371562
EST:     CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAG                         ATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
genomic: CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAGgtacgattac ... gtatttgcagATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
EST: gi|100448276|gb|CJ972575.1|CJ972575
EST:     CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAG                         ATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
genomic: CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAGgtacgattac ... gtatttgcagATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
EST: gi|100447965|gb|CJ972264.1|CJ972264
EST:     CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAG                         ATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
genomic: CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAGgtacgattac ... gtatttgcagATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
EST: gi|162196933|gb|FC375184.1|FC375184
EST:     CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAG                         ATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
genomic: CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAGgtacgattac ... gtatttgcagATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
EST: gi|18350746|gb|BJ182797.1|BJ182797
EST:     CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAG                         ATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
genomic: CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAGgtacgattac ... gtatttgcagATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
EST: gi|100383772|gb|BY969301.1|BY969301
EST:     CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAG                         ATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG
genomic: CCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATGGTTCAGgtacgattac ... gtatttgcagATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG