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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCAGGACTCACCTCCGCAATATGATCATTGTCCCAGAGATGATCGGTAGCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatattcggtcacgctatttttgactctccatcagtccgtgctatagggaagaattgattgaattcaatactagcttggacaacggagtagagggtggactggttccatttgcagcgtgaaagcctgaccttgtaaatgtctttgtgcag

Basic information

species Physcomitrella patens
transcript PP1S91_124V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S91_124V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ26636 (Selaginella moellendorffii), 5'ss of exon 3
CGTCAGGACTCACCTCCGCAATATGATCATTGTCCCAGAGATGATCGGTAGCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtat---aatattcggtc-acgctatttttg-actctccatcagtccgtgctatagggaagaattgattgaattcaatactagcttggacaacggagtagagggtggactggttccatttgcagcgtgaaagcctgaccttgtaaatgtctttgtgcag
 ||  | || || ||||| |  |||||||| |||||||||||||| || ||| ||||||| || |||||||| ||||| ||||||||||| |||||||||||     |   |   |||  ||   || | |   |||  |    ||    || | | || | |                                                                                                
AGTGCGAACGCATCTCCGGAGCATGATCATCGTCCCAGAGATGATTGGCAGCATCATTGGCGTCTACAACGGCAAGACGTTCAACCAGGTGGAGATCAAGgtgagcgagcgtcttgtctgcgtgcttctcgtgttctaaacttctctcgcctctggtgacgcag-----------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37844567|gb|BJ602575.1|BJ602575
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162249186|gb|FC421230.1|FC421230
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|19790104|gb|BQ041698.1|BQ041698
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162206952|gb|FC382961.1|FC382961
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162250758|gb|FC426607.1|FC426607
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162261360|gb|FC437793.1|FC437793
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162235317|gb|FC412284.1|FC412284
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|19785675|gb|BQ040365.1|BQ040365
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162248412|gb|FC423719.1|FC423719
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|15327271|gb|BI487857.1|BI487857
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162278671|gb|FC454781.1|FC454781
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTTTCCATTTTGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|19782732|gb|BQ039900.1|BQ039900
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162216742|gb|FC392769.1|FC392769
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|67693057|gb|BJ953290.1|BJ953290
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162250759|gb|FC426608.1|FC426608
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162201936|gb|FC376934.1|FC376934
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|37821090|gb|BJ579156.1|BJ579156
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162236136|gb|FC411125.1|FC411125
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|13251598|gb|BG362501.1|BG362501
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162227209|gb|FC402839.1|FC402839
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|7047184|gb|AW477078.1|AW477078
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTAGGCTGAGTTCTGCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162215961|gb|FC393418.1|FC393418
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162235548|gb|FC411852.1|FC411852
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162225783|gb|FC400723.1|FC400723
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|6102283|gb|AW126753.1|AW126753
EST:     TCATTTGGTGTGTACAACNGGGAAGACTTTCAACCAGGTCCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGC
genomic: TCATT-GGTGTGTACAAC-GGGAAGACTTTCAACCAGGTC-GAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGC
EST: gi|162202235|gb|FC378091.1|FC378091
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|67725709|gb|BJ975968.1|BJ975968
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162235316|gb|FC412283.1|FC412283
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|67569788|gb|BJ942612.1|BJ942612
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162215962|gb|FC393419.1|FC393419
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162278672|gb|FC454782.1|FC454782
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|15320389|gb|BI488399.1|BI488399
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162262992|gb|FC438800.1|FC438800
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162253163|gb|FC428995.1|FC428995
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162260278|gb|FC435581.1|FC435581
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|7067563|gb|AW497418.1|AW497418
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|37845709|gb|BJ603717.1|BJ603717
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|162235408|gb|FC411543.1|FC411543
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
EST: gi|7207283|gb|AW561286.1|AW561286
EST:     GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAG                         CCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT
genomic: GCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 52

CGTCAGGACTCACCTCCGCAATATGATCATTGTCCCAGAGATGATCGGTAGCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatatt ... ctttgtgcagCCTGAGATGATTGGGCACTACTTGGCTGAGTTCTCCATTTCGTACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGAGCTACGCACTCTTCGCGATTCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCAGGACTCACCTCCGCAATATGATCATTGTCCCAGAGATGATCGGTAGCGTCATTGGTGTGTACAACGGGAAGACTTTCAACCAGGTCGAGATCAAGgtataatattcggtcacgctatttttgactctccatcagtccgtgctatagggaagaattgattgaattcaatactagcttggacaacggagtagagggtggactggttccatttgcagcgtgaaagcctgaccttgtaaatgtctttgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA