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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGGAAGCGGGGGGGCTCCCCAGTTGGACCCGAACCAGTACATCAACGCGATGCAACAAGTGATGCAAAATCCTCAGTTCATGACCATGGCAGAACGgctcggcaacgccctgatgcaggtgcggtagcgttcgttgggtggggtggttggtggagcagggaagggggtaggaagtgtatacggatgtgtgcggtta...

Basic information

species Physcomitrella patens
transcript PP1S8_3V6.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S8_3V6.3 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv03s0038g04270.t01 (Vitis vinifera), 5'ss of exon 4
GTGCTGGAAGCGGGGGGGCTCCCCAGTTGGACCCGAACCAGTACATCAACGCGATGCAACAAGTGATGCAAAATCCTCAGTTCATGACCATGGCAGAACGgctcggcaacgccctgatgcaggtgcg-gtagcgttcgttg--ggtggggtggttggtggagcagggaagggggtagga-agtgtatacggatgtgtgcggtta------------------------
                       ||||| ||| |  | |||||      | | ||||||||||| |||||||||||||| || ||||| ||||| || || || || || ||  | ||||||||  |  | |  ||   ||  | |   |   ||  ||    |         ||| || |   ||     || | |  | |||                        
----------------------ACAGTTTGACACACAACAGTATTATTCCACCATGCAACAAGTTATGCAAAATCCTCAATTTATGACTATGGCTGAGCGTCTTGGTAATGCATTAATGCAGgtttgtatggtctttcatgttgtttaagctatttctgtgttattattttatgtatgataaaataatatcatttttcagattaaatttcagtggcatattttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100449146|gb|CJ973445.1|CJ973445
EST:     GCGATGCAACAAGTGATGCAAAATCCTCAGTTCATGACCATGGCAGAACG                         GCTCGGGCAAGCCATGGGCGTGGGTGTGCCGGGAGCGGACGGGCTTCAAAT
genomic: GCGATGCAACAAGTGATGCAAAATCCTCAGTTCATGACCATGGCAGAACGgctcggcaac ... tcctgagcagGCTCGGGCAAGCCATGGGCGTGGGTGTGCCGGGAGCGGACGGGCTTCAAAT