1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTGGAGGAGGAACTTTACAAAGCACGGACTATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccgtctcttcactctttgtgggaagtccattcatgtaactcgatgatgtaaaattggacttggtttacatgtcatttcttctttgagaacatc...
species | Physcomitrella patens |
transcript | PP1S89_217V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|208380398|gb|DC907723.1|DC907723
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|67578479|gb|BJ950646.1|BJ950646
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|100360402|gb|BY984109.1|BY984109
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|100421646|gb|BY976247.1|BY976247
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|100410182|gb|BY974451.1|BY974451
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|208379652|gb|DC903707.1|DC903707
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|100441473|gb|BY980895.1|BY980895
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|100410153|gb|BY974437.1|BY974437
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|100444813|gb|BY982641.1|BY982641
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|208371674|gb|DC932503.1|DC932503
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|100388937|gb|BY988813.1|BY988813
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|208351804|gb|DC910358.1|DC910358
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCAEST: gi|100445691|gb|CJ969990.1|CJ969990
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
EST: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACG GNNNNNNNCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
genomic: TATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccg ... catgcttcagGTTTTTTTCTCCGAATGCTGCTTGGACCTGCTAATGTCAGGGCAACACGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGAGGAGGAACTTTACAAAGCACGGACTATGCTTTACGATGGAGACGTGGCAACTTTACTTCCTGCCAAGGCCAACGgtgagcaccgtctcttcactctttgtgggaagtccattcatgtaactcgatgatgtaaaattggacttggtttacatgtcatttcttctttgagaacatc
- - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - TGGAGA