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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag

Basic information

species Physcomitrella patens
transcript PP1S88_180V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os10g27050.1 (Oryza sativa), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgt---cagttc-tcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaat-tttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
||||| ||| |||| |||||||||||||||||||| ||||| |||||||||||||| |  || ||||| || || || || | |||   || | | |    | |  | |||||  |    || | |   |||| |  ||  |  | ||| | ||||||| |    |||| |  | | ||||| |                                                                     
CCAGTTAAGAGCCCAGTCACAATTTGTGGTGATATCCATGGGCAATTCCATGATCTAGTAGAGCTCTTTCGGATTGGTGGGAAGgtactcaatccattggcattagttttgtttctttctgctctc---tttggtctttgtttcatgcttt-aaaagctgacatttgttttgtactgtttaccag--------------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os03g59060.2 (Oryza sativa), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgt--cagttctcaataattctcttgttgttagtagcccgcaagtttgtt-aatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| |||||| | ||||| ||||| ||||||||||||||||| || || ||||| ||||| ||||| ||||||||||| |||| |||  ||||| |     ||| || ||||  | ||  ||      | | || | |  ||  ||  ||  | |   | | |  |  |||  | |||  ||                                                                      
CCTGTAAAGAGTCCTGTTACAATATGTGGTGATATTCATGGGCAGTTTCATGACCTTGCAGAACTGTTCCGAATCGGTGGAAAGgtatcagttgt-----attttcctgttcgttgtcccctttgcatatcttgagtccatcaaacttcaaatatatttatgctttctcttcactttaccag---------------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os03g07150.1 (Oryza sativa), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgt-cagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||  |||| || || ||||||||||||||||| || ||||||||||||||||  ||||| || || ||||| || | ||| |  ||  || | |  || ||| |   | ||    | ||  ||  |    |      | ||| |||    |   | | |  | |   ||     | |                                                                  
CCTGTCAAAAGCCCAGTAACGATTTGTGGTGATATTCACGGACAATTCCATGATCTTGTAGAACTTTTTCGGATCGGTGGGAAGgtactatttgcattta--cttttgctacca-tactttgaaatcttcctttcgttattctgttcttaaagatacttaa-tatatttgttcttctttgtttcag---------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G108355_T01 (Zea mays), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatt--tatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| |||||| | ||||| || || || |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |||     |||| || ||    |||  || |   |     | | |   | ||  || ||||  | |  |||  |||  |    ||| |||  || || |  |                                                                 
CCTGTAAAGAGTCCTGTTACTATATGCGGTGATATTCATGGACAATTTCATGATCTTGCTGAACTCTTCCGAATCGGTGGAAAGgta---cctcactagtttc--tgtcatttgcttctgtttaatctccgatttagtaaggaacatgttgaaatttcagta----tcttgaaactttcacttctaccag------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G382077_T01 (Zea mays), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
||||| ||  ||||||| || ||||||||||||||||||||||||||||||||||||   ||||| ||||| || || || | |||     |||| |      | |  | || ||       |  | | |  | || ||       |||     |||    |  ||    |  | | |  |   | |||  ||||   ||                                                
CCAGTTAAAAGCCCTGTGACGATTTGTGGTGATATTCATGGCCAATTCCATGATCTTTTAGAACTTTTCCGGATTGGTGGGAAGgta----ctcagtgcactgcataatctttgtgcattatatctctttgcacttttgatgctattcat---ttca----ttctccaagagctgatagaccattctttgttgtttactag-----------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G062394_T02 (Zea mays), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| |||||| | ||||| || || || |||||||||||||| ||||| |||||||||||||||||||||||||| || |||| |||     |||| || || |||  |  || |    | |  | |||  | |||||   |||     ||||  | || |   || |   ||||||| |   |                                                                 
CCTGTAAAGAGTCCTGTTACTATATGCGGTGATATTCATGGACAATTTCATGATCTTGCTGAACTCTTCCGAATTGGTGGAAAGgta---cctcacta-ttttctgttcatttgct-tctgtcacttttctgatttaataaag-----aaaatgttaaaa---ttttgatattttaccagtgtccag-------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G062394_T01 (Zea mays), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| |||||| | ||||| || || || |||||||||||||| ||||| |||||||||||||||||||||||||| || |||| |||     |||| || || |||  |  || |    | |  | |||  | |||||   |||     ||||  | || |   || |   ||||||| |                                                                     
CCTGTAAAGAGTCCTGTTACTATATGCGGTGATATTCATGGACAATTTCATGATCTTGCTGAACTCTTCCGAATTGGTGGAAAGgta---cctcacta-ttttctgttcatttgct-tctgtcacttttctgatttaataaag-----aaaatgttaaaa---ttttgatattttaccag--------------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G112793_T01 (Zea mays), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgt--cagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatct-tgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||| | || || ||||| ||||||||||| ||||| ||||||||||||||||  || || |||||||| || || | |||  ||  | |   | | ||   | |  ||| |  ||| |       ||||  |||||   ||  | ||   | |||       |   ||  |  ||||  |||  ||  | |||  |    ||   ||                                      
CCTGTCAAGAGTCCAGTTACAATATGTGGTGATATACATGGACAATTCCATGATCTTGTAGAGCTTTTCCGAATTGGTGGGAAGgtaccaactattt-tgactcgactttacttatttccccccc------ttaaagtatggt--ctacccaagattgaagccaccatttccatcctctaatccctgtcatttttattctctcctgtttccag--------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA19G39170.1 (Glycine max), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgt-cagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||  ||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| || ||||| || || | |||  | ||    |   |    || || || ||   |       |  || |     ||||  ||| ||      ||  | |  ||   |    | || |||                                                                 
CCTGTTAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAATTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGGAAGgtataatttctgactgtggatttcttttt-gttttcaattttctgtttcagccggggaatgtcttaactaactaattgagacctgtcaaagaaaaagcttt----------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA08G11940.1 (Glycine max), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaat-cttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||  | ||||| ||||||||||||||||||||||| ||||||||||||||||| || || || || || || || | |||   ||||  || |||  | | ||   | |   |    | |   | ||||| ||  |  |     |     |    | |    ||| | |  | | ||||                                                                
CCTGTGAAAAGTCCTGTTACAATTTGTGGTGATATTCATGGGCAATTCCATGATCTTGCAGAGCTTTTTCGCATTGGAGGGAAGgt--attctttatgattgacgtttttacattcaacatgtattaattaaatttgtgacacgttgactacatagatttatatgtatgaaatatgtagtacttgg---------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA05G28790.2 (Glycine max), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||  | ||||| ||||||||||||||||||||||| ||||||||||||||||| || || || || || || || | |||   ||||  || ||  | | ||| |   |    |     ||| |||| ||   ||  |  | |      | | |  | | |   || |   ||   |||  | | ||                                                       
CCTGTGAAAAGTCCTGTTACAATTTGTGGTGATATTCATGGGCAATTCCATGATCTTGCAGAGCTTTTTCGCATTGGAGGGAAGgt--attctttatgatagt-tggttttacattcaacatgtatttattaaatttgtgacacattga------ctacatagattttatatgtatgaaatatgtagtacatg-------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA03G36510.1 (Glycine max), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||  ||||||| ||||||||||| ||||||||||| || || ||||||||||||||||| || ||||| || || | |||         |||||| |||   | |  |||   |    ||||   | ||| |      | |||   |||   || ||| ||  | |     |||   |   |  |      | | ||||                                           
CCTGTTAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGGAAGgt---------ataatt-tctgactat--gtatttcttttgttttcaattttcta-----tttca---gctggggaatgt-cttaactaaactaattcagacctgtcaaagaaaaagcttt-------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA09G15900.1 (Glycine max), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgt--cagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||  ||||||| ||||||||||||||||||||||| || || ||||| ||||||||||| || ||||| || || | |||  ||||||| | ||  || |||    || |||  |  |    |  || |  |  ||||  ||| ||      ||  | |  ||   ||   | |  |||                                                                 
CCTGTGAAAAGCCCTGTGACAATTTGTGGTGATATTCATGGGCAGTTTCATGACCTTGCTGAACTATTTCGAATTGGAGGGAAGgtatcagttctgacta--tcactttccttttgtattcaactccctgtttcagctggggaatgtcttaactaactaactgagacctgccatagaaaaggcttt----------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA02G26650.1 (Glycine max), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgt--cagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||  |||| || ||||||||||||||||| ||||| || || ||||||||||||||||| || ||||| || || | |||  ||||||| | ||  || |||    || |||  |  |    |  || |  |  ||||  ||| ||      ||  | |  ||   |    | |  |||                                                                 
CCTGTGAAAAGCCCCGTGACAATTTGTGGTGATATCCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGAATTGGAGGGAAGgtatcagttctgacta--tcactttccttttgtattcaactctctgtttcagctggggaatgtcttaactaaataattgagacctgccaaagaaaaggcttt----------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT2G42500.1 (Arabidopsis thaliana), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||  ||||||| ||||| || |||||||||||||| || |||||||||||||| || || ||||| || ||||||||||| |  |||  | |||   |        ||    |  ||| |   |  |   ||     ||  ||||   | ||   | |||||   |||| ||                                                                      
CCTGTGAAAAGCCCTGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTATAGGGGGAATGgtaacatctataaaatatac--------agagctctacaaatagctctaccaat-----cttacaaagtattaa---ttttctctt-ttttgcag---------------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT2G42500.3 (Arabidopsis thaliana), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||  ||||||| ||||| || |||||||||||||| || |||||||||||||| || || ||||| || ||||||||||| |  |||  | |||   |       ||  |      |  | |   ||| |    |||                                                                                                         
CCTGTGAAAAGCCCTGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCgtatagggggaatggtaacatctataaaatatacagagctctacaaat----agctctaccaatcttacaaag---------------------------------------------------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G58500.1 (Arabidopsis thaliana), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||  ||||||| ||||| || |||||||||||||| || |||||||||||||| || || ||||| || ||||||| ||| |  |||  |||| |||         | | | |   ||| |   |  ||| |      | |  |     ||  | |  | || |      ||||  | || ||  ||   |    ||                                             
CCTGTTAAAAGCCCTGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTATTGGGGGAAAGgtaacatct--ataactcttgcac----aatggacataaagatgcatgttttgt------tatttagtctgcatcaatcctttctag-----caat--tattatttatggctggggact---------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv13s0156g00060.t01 (Vitis vinifera), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctctcaaaagctcaagagtgttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
||||||||  ||||||| || || ||||| ||||||||||| ||||| ||||||||||| ||||| || ||||| || || | |||   |  ||  |    ||  | |  |   |  | |    |||| ||  |||  |  ||     ||||     || |        |   | |  |   ||                                                                
CCAGTAAAAAGCCCTGTGACCATATGTGGAGATATTCATGGGCAATTTCATGATCTTGCAGAACTTTTTCGAATTGGAGGGAAGgtatttcgtctgtggcccttctatactccttttctcttgggtttctttgtttgagctagggaagaaaattctgagtgccaaaggtatgctaatgaggatg----------------------------------------------------------------

upper sequence: PP1S88_180V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv06s0004g00830.t01 (Vitis vinifera), 5'ss of exon 3
CCAGTAAAGTGCCCTGTCACAATTTGTGGTGATATTCATGGCCAATTCCATGATCTTGCTGAACTCTTCCGAATCGGGGGAATGgtcagttctcaataattctcttgttgttagtagcccgcaagtttgttaatttatggaagctc--tcaaaagctcaagagtg--ttctcgaattttacaatcttgtttttcctgttcgatatctttcagaggatttttgtgttgattgaagtttgttgctatgtgatag
|| || ||  ||||||| ||||| ||||||||||| |||||||| || |||||||| || || || |||||||| || |||| |||   | |||  | |||      || |   |   || || ||||| |   | |     | |    ||  |||   |    |  | || ||  |  |  ||||                                                                  
CCTGTGAAAAGCCCTGTGACAATCTGTGGTGATATCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAGgtatttactc--tgattaatacattttgtattttcctcatgtttggtgtgtgaacagtgattaaccaccagccagattacggttgctagaggtggatgatct------------------------------------------------------------------